Bioconductor Forum

18

votes

24

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14k

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deseq2 timecourse

updated 3.2 years ago by ethicalhackers • 0 • written 9.1 years ago by john ▴ 120

18

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4

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33k

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deseq2 edger

updated 8.5 years ago by Gordon Smyth 50k • written 8.5 years ago by tonja.r ▴ 80

18

votes

12

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3.7k

views

edgeR deseq2 rna-seq independent filtering

updated 8.9 years ago by Michael Love 41k • written 8.9 years ago by Ryan C. Thompson ★ 7.9k

18

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10

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7.0k

views

edger estimatedispersions glm

updated 8.1 years ago by Gordon Smyth 50k • written 8.2 years ago by maltethodberg ▴ 170

18

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4

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1.6k

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ggbio

3.3 years ago Batool ▴ 370

17

votes

7

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11k

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deseq2 ensembl

updated 6.2 years ago by James W. MacDonald 65k • written 6.2 years ago by casey.rimland ▴ 150

17

votes

7

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5.9k

views

limma removebatcheffect deseq2

updated 7.9 years ago by Ryan C. Thompson ★ 7.9k • written 7.9 years ago by ompandey ▴ 10

17

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8

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3.1k

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gdc tcga wes gdc data

updated 6.0 years ago by Sean Davis 21k • written 6.0 years ago by Biologist ▴ 110

17

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5

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4.1k

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IRanges

updated 7.1 years ago by Martin Morgan 25k • written 7.2 years ago by mdoering ▴ 20

17

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14

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40k

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rnaseq differential gene expression logfc limma R

updated 22 months ago by OE • 0 • written 6.8 years ago by cms72 ▴ 20

17

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4

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8.9k

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support.bioconductor.org editor markdown updates Tutorial

updated 4 weeks ago by Mj.A. • 0 • written 5.2 years ago by shepherl 3.8k

17

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7

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13k

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deseq2 lfc coef contrast

updated 6.7 years ago by Michael Love 41k • written 6.7 years ago by Anke Busch ▴ 10

17

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9

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32k

views

deseq2

updated 3.3 years ago by Michael Love 41k • written 8.3 years ago by ribioinfo ▴ 100

17

votes

4

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30k

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edger rnaseq differential expression

updated 8.8 years ago by Aaron Lun ★ 28k • written 8.8 years ago by Pauly Lin ▴ 150

17

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5

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4.7k

views

limma

5.0 years ago AS ▴ 70

17

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4

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16k

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granges genomicranges sort seqnames order

updated 9.0 years ago by yinghua ▴ 30 • written 9.5 years ago by enricoferrero ▴ 660

17

votes

8

replies

11k

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Microarray

updated 2.7 years ago by Leanne • 0 • written 13.5 years ago by Xie, Zhi NIH/NHLBI [E] ▴ 120

16

votes

5

replies

7.4k

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limma voom deseq normalization ercc

updated 8.4 years ago by Gordon Smyth 50k • written 8.4 years ago by komal.rathi ▴ 120

16

votes

13

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16k

views

deseq2

updated 2.8 years ago by Ian ▴ 10 • written 3.7 years ago by linouhao ▴ 20

16

votes

4

replies

11k

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genomicranges

updated 8.6 years ago by Michael Lawrence ★ 11k • written 8.6 years ago by khauser130d ▴ 50

16

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0

replies

3.7k

views

limma robust arrayWeights

10.4 years ago • updated 7.9 years ago Gordon Smyth 50k

16

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12

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2.3k

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vst Metabolomics DESeq2

2.0 years ago • updated 24 months ago Joan Miró ▴ 80

16

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5

replies

14k

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software error

updated 5.0 years ago by Mike Smith ★ 6.5k • written 5.0 years ago by romanowska.j ▴ 10

16

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25

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3.0k

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tximport dtu salmon TPM rnaseqDTU

written 5.1 years ago by fiona.dick91 ▴ 60

16

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40

replies

8.5k

views

NanoString Differential Expressed Genes Analysis DESeq2

updated 2.3 years ago by Clara • 0 • written 4.7 years ago by lim6432 ▴ 50

16

votes

10

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6.6k

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GenomeInfoDb

updated 14 months ago by Hervé Pagès 16k • written 2.5 years ago by sarah.howles ▴ 20

16

votes

9

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6.5k

views

diffbind medip-seq edger deseq2

updated 6.5 years ago by Rory Stark ★ 5.2k • written 8.1 years ago by florian.noack ▴ 60

16

votes

13

replies

4.3k

views

limma

updated 6.4 years ago by Gordon Smyth 50k • written 6.4 years ago by Nuno Pires ▴ 30

15

votes

2

replies

17k

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dnastringset

updated 8.5 years ago by Martin Morgan 25k • written 8.5 years ago by komal.rathi ▴ 120

15

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9

replies

13k

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org.hs.eg.db uniprot accessions entrez gene identifiers

updated 8.7 years ago by James W. MacDonald 65k • written 8.7 years ago by Aditya ▴ 160

15

votes

14

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3.6k

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limma microarray

updated 9.2 years ago by Sean Davis 21k • written 9.3 years ago by Andreas Heider ▴ 340

15

votes

6

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3.2k

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edgeR limma diffSplice DEXSeq

updated 7.7 years ago by Charity Law ▴ 90 • written 7.7 years ago by maltethodberg ▴ 170

15

votes

6

replies

29k

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edgeR cpm

updated 5.9 years ago by ftroot1010 ▴ 20 • written 6.1 years ago by jxb.dev ▴ 40

15

votes

4

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2.7k

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edger limma deseq2 rnaseq

updated 7.8 years ago by Ryan C. Thompson ★ 7.9k • written 7.8 years ago by WouterDeCoster ▴ 130

15

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22

replies

1.8k

views

limma

27 days ago • updated 5 days ago Chris • 0

15

votes

12

replies

66k

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deseq2

updated 9.1 years ago by Steve Lianoglou ★ 13k • written 9.1 years ago by john ▴ 120

15

votes

17

replies

23k

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wgcna network analysis network correlation coexpression

updated 3.4 years ago by Lluís Revilla Sancho ▴ 730 • written 7.6 years ago by jol.espinoz ▴ 40

15

votes

13

replies

3.0k

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SingleR celldex HumanPrimaryCellAtlasData ensembl

updated 2.5 years ago by xiang ▴ 10 • written 2.5 years ago by immuno.dh ▴ 20

15

votes

3

replies

1.6k

views

DESeq2 RNASeq

updated 2.2 years ago by molly_the_minotaur ▴ 30 • written 3.5 years ago by bi.mi ▴ 90

15

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18

replies

3.3k

views

DESeq2 edgeR goana GO

updated 2.1 years ago by Gordon Smyth 50k • written 2.1 years ago by Raito92 ▴ 60

15

votes

4

replies

32k

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deseq2 metagenomics

updated 3.7 years ago by Ram ▴ 190 • written 3.7 years ago by c.e.chong ▴ 10

15

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4

replies

11k

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genomicranges grangeslist granges s4

updated 2.1 years ago by Hervé Pagès 16k • written 7.9 years ago by richierocks ▴ 40

15

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12

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2.5k

views

deseq2 ZINB-WaVE single cell RNA-seq differential expression

updated 5.7 years ago by Michael Love 41k • written 5.7 years ago by rory.kirchner ▴ 60

15

votes

8

replies

11k

views

deseq2 deseq

9.5 years ago • updated 9.4 years ago salahm ▴ 70

14

votes

10

replies

3.7k

views

systempiper

5.4 years ago Deleted ▴ 70

14

votes

16

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2.7k

views

limma toptable

7.9 years ago giroudpaul ▴ 40

14

votes

19

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19k

views

deseq2 annotation granges

updated 2.2 years ago by Nadine ▴ 60 • written 9.5 years ago by Darya Vanichkina ▴ 120

14

votes

4

replies

14k

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WGCNA Hub Genes KmE Intramodular Connectivity

updated 8.8 years ago by Peter Langfelder ★ 3.0k • written 8.8 years ago by brohawndg ▴ 150

14

votes

12

replies

9.3k

views

limma methylation ewas

updated 7.7 years ago by Steve Lianoglou ★ 13k • written 7.7 years ago by CPR ▴ 30

14

votes

4

replies

29k

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Clustering Clustering

updated 11.5 years ago by Thomas Girke ★ 1.7k • written 11.5 years ago by Guest User ★ 13k