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How to extract the coordinate of dba.plotPCA?
DiffBind
PCA
2 hours ago
feather-W
• 0
0
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0
replies
13
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PCA plot for normalized counts using Diffbind
DiffBind
PCAplot
2 hours ago
Ankit
▴ 20
0
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3
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79
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Doing comparison of RNA-seq data using EdgeR
metaMSdata
edgeR
updated 2 hours ago by
Michael Love
41k • written 18 hours ago by
Faisal
• 0
0
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1
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58
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Differing results from plotMDS and PCAtools
edgeR
PCAtools
updated 3 hours ago by
Gordon Smyth
50k • written 17 hours ago by
Fabian
• 0
0
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3
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37
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fgsea fork
fgsea
updated 11 minutes ago by
shepherl
3.8k • written 11 hours ago by
yimjohns
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43
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New genes that did not exist in dds object suddenly showed up after degPatterns
DESeq2
updated 17 hours ago by
Michael Love
41k • written 18 hours ago by
Mikushi
• 0
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1
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57
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WGCNA: analysis of complex trait associations with regressions
Regression
WGCNA
updated 23 hours ago by
James W. MacDonald
65k • written 23 hours ago by
w.cookson
• 0
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6
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146
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limma models out of memory issue on Slurm HPC
Regression
limma
STATISITICS
HPC
3 days ago • updated 1 hour ago
Jitendra
▴ 10
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Comment: fgsea fork
by
shepherl
3.8k
For What its worth BiocManager should also be able to install the github remotes `BiocManager::install("ctlab/fgsea")`
Comment: fgsea fork
by
alserg
▴ 240
I'm also not sure what you mean by fork, but you also can install the latest version of fgsea directly from GitHub with `devtools::install_…
Comment: limma models out of memory issue on Slurm HPC
by
Jitendra
▴ 10
thanks Gordon, but our methylation epic array input file is quite big and we can't read it in R by just using laptop memory so we need to …
Comment: Doing comparison of RNA-seq data using EdgeR
by
Michael Love
41k
Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
Comment: fgsea fork
by
shepherl
3.8k
Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
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transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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