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2
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37
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errors in annotation
org.Bt.eg.db
3 days ago • updated 11 minutes ago
Josie
• 0
0
votes
0
replies
10
views
How can I properly decode error when using ASICS?
ASICSdata
ASICS
3 hours ago
nep63
• 0
0
votes
1
reply
45
views
Conversion of UniProt to Ensembl
biomaRt
ensembldb
UniProt.ws
updated 4 hours ago by
James W. MacDonald
60k • written 3 days ago by
Recep
• 0
2
votes
2
replies
38
views
the difference between getGEO and getGEOSuppFiles
MicroarrayData
16 hours ago • updated 5 hours ago
Fatemeh
• 0
2
votes
6
replies
239
views
error running UniProt.ws
UniProt.ws
updated 8 hours ago by
James W. MacDonald
60k • written 5 weeks ago by
julien.wollbrett
▴ 10
0
votes
0
replies
13
views
Argument is of length zero in variancePartition/Dream
expression
variancePartition
edgeR
8 hours ago
Jonathan
• 0
0
votes
1
reply
21
views
GSEA with Wikipathways not entirely reproducible
clusterProfiler
updated 8 hours ago by
Guido Hooiveld
★ 3.3k • written 10 hours ago by
Susana
• 0
4
votes
5
replies
460
views
Pathview unable to download pathways
clusterProfiler
KEGGgraph
clusterpr
KEGG
pathview
updated 9 hours ago by
Guido Hooiveld
★ 3.3k • written 7 weeks ago by
rama
▴ 10
0
votes
2
replies
605
views
getBM error in the biomaRt R package
Annotation
updated 9 hours ago by
qiz218591
• 0 • written 8 months ago by
arungowda9738
• 0
0
votes
0
replies
10
views
Correlation between two different datasets: between results of RNAseq and absence/presence of Type3 Secretion System
RNASeq
Correlation
DESeq2
11 hours ago
keshav.prasad.gubbi
• 0
0
votes
2
replies
101
views
IsoformSwitchAnalyzeR package on mouse data
rnaseq
IsoformSwitchAnalyzeR
updated 11 hours ago by
k.vitting.seerup
▴ 120 • written 19 days ago by
Ryan
• 0
2
votes
1
reply
43
views
Error in Create switchAnalyzeRlist
AlternativeSplicing
RNASeq
IsoformSwitchAnalyzeR
gtf
updated 11 hours ago by
k.vitting.seerup
▴ 120 • written 2 days ago by
bpshtiwan
▴ 10
0
votes
1
reply
43
views
Retrieve gene summary start/end in biomart query
biomaRt
updated 12 hours ago by
Mike Smith
★ 5.7k • written 1 day ago by
rbenel
▴ 20
1
vote
2
replies
83
views
TPM normalization starting with read counts
edgeR
DESeq2
updated 15 hours ago by
Gordon Smyth
46k • written 1 day ago by
JAcky
• 0
14 results • Page
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Comment: errors in annotation
by
Josie
• 0
OK thanks James. I'll send off an email to GenBank, see if they feel inclined to correct some errors.
Answer: Conversion of UniProt to Ensembl
by
James W. MacDonald
60k
I will provide an example below. But first, there is a vignette for biomaRt (actually two), and it has extensive examples of how to use the…
Comment: the difference between getGEO and getGEOSuppFiles
by
Fatemeh
• 0
thank you!
Answer: the difference between getGEO and getGEOSuppFiles
by
James W. MacDonald
60k
When submitting data to GEO, you are supposed to provide both the raw data and a matrix of processed data. When you use `getGEO` you get th…
Comment: error running UniProt.ws
by
James W. MacDonald
60k
https://www.bioconductor.org/checkResults/3.15/bioc-LATEST/UniProt.ws/nebbiolo1-install.html
Votes
A: DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Ge
DeSeq2 results converting ENSG IDs to Gene Symbols, more than one ENSG ID per Gene symbol
Answer: the difference between getGEO and getGEOSuppFiles
Answer: the difference between getGEO and getGEOSuppFiles
Answer: TPM normalization starting with read counts
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