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SingleR Label.Ont
SingleR
written 20 months ago by
saeed.khalili
• 0
5
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7
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2.5k
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limma correction for tumor purity
limma
6 days ago • updated 18 hours ago
gabriella.jacobson-eisenberg
▴ 20
2
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5
replies
837
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Dealing with heteroscedascity in limma
limma
splines
Proteomics
written 6 days ago by
Thomas
• 0
2
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14
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2.3k
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How to load scRNA-seq data from GEO
SingleCellExperiment
GEO
7 days ago • updated 2 days ago
petergrahamclark
• 0
0
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4
replies
289
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Heatmap of a transformed deseq object with pheatmap
DESeq2
heatmaps
9 hours ago • updated 8 hours ago
caroline.zanchi
• 0
2
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4
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1.6k
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how to use `arrayWeightsQuick()`?
limma
updated 6 days ago by
TraceMorrow
• 0 • written 4 weeks ago by
matthew
• 0
8
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3
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2.3k
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DESeq2 class error: superclass "ExpData" not defined in the environment of the object's class
DESeq2
updated 4 days ago by
Michael Love
43k • written 7 days ago by
Cassia
▴ 40
0
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1
reply
226
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Filtering out non-variable probes from EPICv2 matrix
DMRcate
EPICv2manifest
updated 6 days ago by
James W. MacDonald
68k • written 10 days ago by
Sasha
• 0
0
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4
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918
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DESEQ2 - Correctly altering log2foldchange when switching comparison direction (HELP GREATLY APPRECIATED)
DESeq2
8 days ago • updated 2 days ago
sk
• 0
0
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3
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953
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Gene Ontology (GO) Analysis
GOstats
hyperGTest
GO
enrichGO
clusterProfiler
23 days ago • updated 2 days ago
GA
▴ 10
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5
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1.4k
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News:
EuroBioC2023 abstract submission is open!
presentation
EuroBioC2023
Conference
community
Bioconductor
updated 2 days ago by
arden
• 0 • written 2.2 years ago by
Maria Doyle
▴ 100
0
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1
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159
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Best tximport quant.genes.sf
tximport
tximeta
Bioconductor
updated 19 hours ago by
ATpoint
★ 4.8k • written 1 day ago by
yob4003
• 0
0
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0
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53
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Combat-seq usage
sva
updated 19 hours ago by
ATpoint
★ 4.8k • written 1 day ago by
bbao
▴ 10
0
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4
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508
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Check removeBatchEffect effectiveness
RNAseq
limma
removeBatchEffect
updated 6 days ago by
Gordon Smyth
52k • written 15 days ago by
massimo
• 0
0
votes
1
reply
138
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Error in readCodelinkSet function
error
codelink
updated 17 hours ago by
James W. MacDonald
68k • written 23 hours ago by
nazaninhoseinkhan
• 0
0
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3
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673
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Model performance for spline modelling of RNA-seq timecourses in edgeR
edgeR
limma
written 4 weeks ago by
skiaphrene
▴ 10
0
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0
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13
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DESeq2 Apeglm Coefficient Reordering / Log2FoldChange Comparison Change
DESeq2
apeglm
6 hours ago
sk
• 0
4
votes
0
replies
3.2k
views
Evidence-based guidelines for use the method="robust" option in lmFit
Microarray
Normalization
Bayesian
Regression
Cancer
limma
Microarray
Normalization
Cancer
updated 6 days ago by
Thomas
• 0 • written 14.0 years ago by
Richard Friedman
★ 2.0k
0
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2
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1.5k
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News:
Announcing GBCC 2025: The first-ever joint conference between Bioconductor and Galaxy!
Conference
Bioconductor
Community
updated 5 days ago by
Mike Casey
• 0 • written 8 months ago by
Maria Doyle
▴ 100
0
votes
1
reply
331
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News:
Ensembl 114 / Ensembl Genomes 61 has been released!
biomaRt
ensembldb
updated 3 days ago by
sophisticated.blackbird.meau
• 0 • written 5 days ago by
Aleena_Ensembl
▴ 30
0
votes
1
reply
137
views
What happened to the Joost2016 dataset
org.Sc.sgd.db
updated 18 hours ago by
shepherl
4.1k • written 3 days ago by
clementleong
• 0
0
votes
0
replies
34
views
Difference in DESeq2 output and tidybulk DESeq2 method
DifferentialExpression
DESeq2
tidybulk
RNASeq
16 hours ago
s.malik
• 0
0
votes
1
reply
121
views
FlowSOM is unable to create Output
FlowSOM
updated 6 days ago by
ATpoint
★ 4.8k • written 6 days ago by
marco.klein1
• 0
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Comment: Heatmap of a transformed deseq object with pheatmap
by
caroline.zanchi
• 0
I used this argument in the second paragraph of code forthe heatmap, this is wehre I got the message Error in `[.default`(annotation_col, c…
Answer: Heatmap of a transformed deseq object with pheatmap
by
James W. MacDonald
68k
Ah, yes. The non-ASCII character error. My favorite! Please note that `pheatmap` is not a Bioconductor package, so you should be asking …
Comment: Heatmap of a transformed deseq object with pheatmap
by
caroline.zanchi
• 0
It is in ! It just took longer than planned :) ... aaaand now that I added the heatmap in I realize lits of genes really do not look like t…
Comment: Heatmap of a transformed deseq object with pheatmap
by
James W. MacDonald
68k
You neglected to add the code you use to generate the heatmap.
Answer: Error in readCodelinkSet function
by
James W. MacDonald
68k
Please don't cross-post to Biostars. Either post here or there, but not both.
Votes
Comment: How to load scRNA-seq data from GEO
limma correction for tumor purity
limma correction for tumor purity
Answer: limma correction for tumor purity
Answer: limma correction for tumor purity
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