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18
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News: List of Deprecated Packages for Bioc3.18
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ChAMP input: Beta Matrix?
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News: List of Deprecated Packages for Bioc3.19
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updated 16 days ago by • 0 • written 8.5 years ago by ▴ 60
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BAM files to Genomic Ranges object
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object HPOGENE is not exported by namespace HPO.db
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updated 10 months ago by ▴ 50 • written 10 months ago by ▴ 30
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Can I use EdgeR log2(cpm) instead of voom log2(cpm) to be analyzed as microarray data?
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written 7.8 years ago by ▴ 10
3
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updated 6 months ago by ▴ 200 • written 7.0 years ago by ▴ 100
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bug in cpg.annotate() and DMR.plot: bad defaults for what and arraytype arguments
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updated 7 months ago by ▴ 200 • written 7.5 years ago by ★ 2.0k
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Normalizing Affy Almac Xcel Array Data from CEL files
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updated 4 months ago by • 0 • written 5.8 years ago by ★ 4.1k
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Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
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WGCNA documentation not available
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Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it does not happen in Linux
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error in ChAMP loading file
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Where can I find EnsDb.Hsapiens.v105?
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Cannot connect to annotationhub server
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Any tools to convert .gff to .gtf format
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LIMMA : design (1, 2, 3, 3 ) , I got EXCITING results, what could be the logic, since i have 2 replicates for 3rd group only ?
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What does evidence of batch effect in bulk rnaseq look like?
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updated 26 days ago by 51k • written 28 days ago by • 0
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Archives prior to 3.15 gone
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updated 10 months ago by 4.0k • written 24 months ago by ▴ 30
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readVcf(remoteFile, "hg19", "region") works on macos, fails on linux and in docker
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extract rsids of SNPs using their genomic positions
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SGSeq: moving toward diffex from SGSeq analysis
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globaltest question
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How should I handle read counts derived from SGSeq when they were passed to limma/edgeR
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updated 16 days ago by • 0 • written 4.0 years ago by ▴ 10
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pd.mogene.2.0st Error Installing in R 3.1.2
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written 9.6 years ago by ▴ 10
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How to use removeBatchEffect for removing effect of multiple confounding variables
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updated 3 days ago by 67k • written 8.3 years ago by ▴ 10
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updated 4 months ago by • 0 • written 8.3 years ago by • 0
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Problems with Feature counting
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8 months ago mirjanakessler • 0
1,616 results • Page 1 of 33
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Answer: Gene expression analysis of parents offsprings with multiple tissue types by James W. MacDonald 67k
This support site is primarily intended to help people with technical software issues rather than analysis of specific datasets. You could …
Comment: Error in GOmeth function of missMethyl when EPICv2 annotation is used by s.malik • 0
thanks, will give it a try
Answer: Harmonizing RNA-seq data of different sourceS(cell vs. tissue) to further conduc by James W. MacDonald 67k
Your question is off-topic for this site. You might try over on biostars.org instead.
Answer: Student by deeenes ▴ 60
An alternative is to use [`OmnipathR::translate_ids`][1] (developed by me): ``` library(OmnipathR) library(magrittr) metabolites <- data.…
Comment: Inconsistent result in edgeR by hiroko.ohmiya • 0
Thank you so much! I understand the result after calculating CPMs.
Votes
Comment: Error in GOmeth function of missMethyl when EPICv2 annotation is used
Answer: unable to access Annotationhub latest record
How to keep cells square in heatplot function of enrichplot
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