Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
0
votes
0
replies
1
view
Citation for edgeR user guide
edgeR
just now
k___
▴ 30
0
votes
0
replies
9
views
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
DESeq2
1 hour ago
i.sudbery
▴ 30
0
votes
7
replies
595
views
News:
List of Deprecated Packages for Bioc3.19
Release
Devel
ExperimentData
Software
7 weeks ago • updated 1 hour ago
shepherl
3.8k
1
vote
1
reply
29
views
Cannabis OrgDb
KEGGgraph
org.Cs.eg.db
clusterProfiler
KEGG
AnnotationHubSoftware
updated 2 hours ago by
James W. MacDonald
65k • written 3 hours ago by
fernanda.backsouza
▴ 10
0
votes
0
replies
18
views
DESeq2 output used for PCA plot on R studio
DESeq2
RSTUDIO
PCAtools
3 hours ago
Aaliya
• 0
0
votes
0
replies
16
views
News:
Interested in the analysis of Spatial Omics data?
tidySpatialExperiment
SpatialExperiment
MoleculeExperiment
4 hours ago
info
▴ 10
0
votes
2
replies
51
views
minfi::read.metharray.exp
minfiData
minfi
1 day ago • updated just now
clacarion
• 0
0
votes
0
replies
24
views
featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_get_next_read_BIN: Assertion `l_name < 256' failed. Aborted (core dumpe…
metaMSdata
14 hours ago
shuwangxinze1996
• 0
1
vote
2
replies
908
views
DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, parametric = FALSE, : NA/NaN/Inf in foreign function call (arg 1)"
DMRcate
Gviz
updated 16 hours ago by
Tim Peters
▴ 170 • written 13 months ago by
jose.ramirez1
▴ 10
0
votes
1
reply
70
views
limma-voom: Calculate the log-fold change in gene expression within a sample
limma
RNASeq
voom
updated 19 hours ago by
Gordon Smyth
50k • written 20 hours ago by
taur.vil
• 0
3
votes
3
replies
122
views
DESeq2 - dispersion estimation when there is none
DESeq2
updated 5 hours ago by
Michael Love
41k • written 1 day ago by
WardDeb
• 0
1
vote
4
replies
117
views
Error EPICv2 ChAMP
ChAMPdata
IlluminaHumanMethylationEPICv2anno.20a1.hg38
ChAMP
updated 1 day ago by
James W. MacDonald
65k • written 5 days ago by
Mirella Aurora
• 0
0
votes
1
reply
71
views
FDR via q-value
qvalue
updated 1 day ago by
James W. MacDonald
65k • written 4 days ago by
John
• 0
0
votes
3
replies
137
views
Error for AnnotationForge makeOrgPackageFromNCBI function
OrgDb
AnnotationForge
updated 6 hours ago by
James W. MacDonald
65k • written 2 days ago by
Gayatri
• 0
0
votes
2
replies
138
views
RNAseq:Technical replicates from different batches
technicalReplicates
BatchEffect
limma
RNASeq
4 days ago • updated 1 day ago
catv
• 0
0
votes
0
replies
36
views
Improving the design matrices vignette in RNAseq123
RNAseq123
1 day ago
Lluís Revilla Sancho
▴ 730
0
votes
3
replies
1.1k
views
News:
European Bioconductor Conference 2023 planning
Europe
Conference
EuroBioC
Events
News
updated 1 day ago by
lauryfriese932
• 0 • written 18 months ago by
Maria Doyle
▴ 70
6
votes
12
replies
4.6k
views
BiocFileCache/ExperimentHub/AnnotationHub temporary ERROR
BiocFileCache
AnnotationHub
ExperimentHub
6 months ago • updated 1 day ago
shepherl
3.8k
1
vote
11
replies
145
views
Trying to use enrichGO
clusterProfiler
GenomicDistributionsData
KEGG
2 days ago • updated 2 hours ago
fernanda.backsouza
▴ 10
0
votes
0
replies
33
views
Unlocking Potential: NURS FPX Strategies and Insights
levi
NURSFPX
ragene20sttranscriptcluster.db
ssrch
2 days ago
vaxahey107
• 0
12
votes
12
replies
722
views
Why p value inconsistent when using different number of pathway score?
limma
updated 1 day ago by
Robert Castelo
★ 3.3k • written 3 days ago by
Chris
• 0
0
votes
0
replies
53
views
I am trying to detect alternative splicing.
ASpli
3 days ago
Sebashish
• 0
3
votes
2
replies
136
views
Cannabis and KEGGgraph
KEGGREST
GenomicDistributionsData
KEGGgraph
KEGG
updated 1 day ago by
Guido Hooiveld
★ 3.9k • written 3 days ago by
fernanda.backsouza
▴ 10
0
votes
3
replies
92
views
Error retrieving ensembl gene id using biomaRt...
biomaRt
updated 4 days ago by
James W. MacDonald
65k • written 4 days ago by
bas_work
▴ 30
2
votes
2
replies
129
views
OrgDb for maize
clusterProfiler
OrgDb
biomaRt
Zea_mays
updated 4 days ago by
James W. MacDonald
65k • written 4 days ago by
sansan
• 0
1
vote
0
replies
183
views
Tutorial:
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
bioconductor
Install
4 days ago
BioinfGuru
▴ 30
3
votes
6
replies
302
views
FilterByExpr low counts with small sample size
edgeR
6 days ago • updated 1 day ago
Jonathan
▴ 10
0
votes
2
replies
83
views
How to make DGEList and design matrix by edgeR package
DGEList
edgeR
4 days ago
prity6459
• 0
0
votes
3
replies
118
views
Finding DEGs by using edgeR
subsettingdata
edgeR
designmatrix
updated 4 days ago by
Gordon Smyth
50k • written 5 days ago by
prity6459
• 0
0
votes
1
reply
104
views
Log-cpm values from limma
limma
edgeR
RNASeq
updated 4 days ago by
Gordon Smyth
50k • written 5 days ago by
Shaimaa Gamal
• 0
0
votes
4
replies
124
views
FGSEA pre-ranked input in increasing order or decreasing
fgsea
5 days ago • updated 4 days ago
sropri
• 0
0
votes
1
reply
74
views
Different number of exons in reference genome affects DEXSeq analysis
DEXSeq
updated 5 days ago by
Alejandro Reyes
★ 1.9k • written 5 days ago by
Alessia
• 0
0
votes
1
reply
110
views
Adding columns to DEXSeqResults object
DEXSeq
updated 5 days ago by
Alejandro Reyes
★ 1.9k • written 7 days ago by
Clyde
• 0
0
votes
0
replies
80
views
Warning while loading DEP package
DEP
updated 5 days ago by
shepherl
3.8k • written 5 days ago by
Namrata
• 0
0
votes
1
reply
82
views
rlog transformation
DESeq2
updated 5 days ago by
Michael Love
41k • written 5 days ago by
ishij9717
• 0
0
votes
1
reply
79
views
ONT long-read RNA sequencing - data analysis options
DESeq2
LongRead
DEXSeq
IsoformSwitchAnalyzeR
RNASeq
updated 5 days ago by
Michael Love
41k • written 5 days ago by
09191919
• 0
0
votes
1
reply
88
views
DESeq2 Error in `.rowNamesDF<-`(x, value = value): Invalid 'row.names' length
DESeq2
updated 5 days ago by
Michael Love
41k • written 6 days ago by
ussarizona
• 0
0
votes
1
reply
103
views
covariate with negative and positive values
DESeq2
updated 5 days ago by
Michael Love
41k • written 6 days ago by
Brynn
• 0
0
votes
1
reply
108
views
DESEQ2 output gives multiple groups when only 2 groups are present
DESeq2
updated 5 days ago by
ATpoint
★ 4.0k • written 6 days ago by
quanah.hudson
• 0
1
vote
2
replies
176
views
significant difference of p-values with dream() after updating VariancePartition
variancePartition
5 days ago • updated 4 days ago
Le
• 0
1
vote
2
replies
122
views
Error in champ.load(): The following specified files do not exist
ChAMP
5 days ago
Sherin
• 0
0
votes
1
reply
76
views
Input Question for deseq.r
RSeqAn
updated 5 days ago by
ATpoint
★ 4.0k • written 6 days ago by
Nina
• 0
0
votes
4
replies
181
views
Differential peaks that were not identified in diffbind were identified in diseq2
DiffBind
DESeq2
ATACSeq
6 days ago • updated 3 days ago
lonn
• 0
0
votes
7
replies
230
views
Methylation Analysis experiment design using Limma
DNAMethylation
limma
methylationArrayAnalysis
6 days ago • updated 10 hours ago
hortense96
• 0
0
votes
0
replies
58
views
News:
Services
flowBeads
6 days ago
creativepeptides2018
• 0
0
votes
0
replies
48
views
Enzyme Engineering
BioTIP
6 days ago
bocchemistry
• 0
0
votes
0
replies
57
views
News:
TIDES USA 2024
flowBeads
6 days ago
bocsci11
• 0
0
votes
0
replies
71
views
Syntaxt Error in IsorcorrectoR package with Molecule Info File
Syntaxerror
IsoCorrectoR
7 days ago • updated 6 days ago
Maliha Tabassum
• 0
0
votes
4
replies
146
views
flowStats Search Error
flowStats
updated 7 days ago by
shepherl
3.8k • written 7 days ago by
tholmes
• 0
3
votes
18
replies
2.8k
views
News:
List of Deprecated Packages for Bioc3.18
Deprecation
devel
Bioconductor
Devel
10 months ago • updated 6 days ago
shepherl
3.8k
1,748 results • Page
1 of 35
Recent ...
Replies
Answer: List of Deprecated Packages for Bioc3.19
by
shepherl
3.8k
singleCellTK has been fixed and will remain in Bioconductor
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
Yes, I'm working only with genes from terpenoids pathway (14 genes), so I can't use enrichGO? Can you recommend a package or something like…
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
Your awnser at Cannabis orgDb solve my problems using enrichGO by far. I'm underdegree biotechnology student, and I learning bioinformatic…
Comment: Trying to use enrichGO
by
Guido Hooiveld
★ 3.9k
It is indeed better. Anyway, did you notice this part in the output from `str(ortologos_filtrados)`: `$Gene.ID : int 115709372 115716460 …
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
I'm new here, but its better now?
Votes
Comment: Trying to use enrichGO
Answer: Cannabis OrgDb
DESeq2: How to find out how well the model fits the data?
Comment: DESeq2 - dispersion estimation when there is none
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
Awards
• All
Popular Question
to
i.sudbery
▴ 30
Scholar
to
Michael Love
41k
Popular Question
to
shepherl
3.8k
Scholar
to
Gordon Smyth
50k
Popular Question
to
taur.vil
• 0
Locations
• All
United States,
just now
United Kingdom,
just now
United States,
1 minute ago
France,
8 minutes ago
France,
18 minutes ago
Traffic: 835 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6