0
votes
0
replies
6
views
Math expression in shapeCustom legend in EnhancedVolcano
EnhancedVolcano
46 minutes ago pl23 • 0
2
votes
6
replies
86
views
Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
DESeq2 RUVSeq RUVseq BatchEffect DES
updated 50 minutes ago by ▴ 350 • written 5 hours ago by • 0
0
votes
0
replies
24
views
One error problem occurred caused by data type during using GDCprepare to handle BRCA data
GDCRNATools TCGA
10 hours ago glaciya2018 • 0
1
vote
2
replies
82
views
Reproducibility issue with scran together with lapply and BiocParallel
scran BiocParallel bluster
1 day ago • updated 10 hours ago ATpoint ★ 4.0k
0
votes
1
reply
46
views
PCA plot suggestions
DESeq2 PCAtools
updated 4 hours ago by • 0 • written 14 hours ago by • 0
0
votes
1
reply
74
views
DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
DESeq2 RNAseq
updated 21 hours ago by 41k • written 1 day ago by • 0
2
votes
5
replies
129
views
How to retrieve gene ontology GO class from gene list?
GO.db goTools
updated 2 hours ago by 65k • written 1 day ago by • 0
0
votes
3
replies
109
views
Opposite sign of LFC in count plots of DEGs (DESeq2)
DESeq2
updated 5 hours ago by 65k • written 1 day ago by • 0
0
votes
8
replies
228
views
DESeq2 output used for PCA plot on R studio
DESeq2 RSTUDIO PCAtools
updated 13 hours ago by ★ 1.3k • written 2 days ago by • 0
0
votes
2
replies
109
views
featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_get_next_read_BIN: Assertion `l_name < 256' failed. Aborted (core dumpe…
metaMSdata
2 days ago • updated 12 hours ago shuwangxinze1996 • 0
1
vote
13
replies
255
views
Trying to use enrichGO
clusterProfiler GenomicDistributionsData KEGG
4 days ago • updated 21 hours ago fernanda.backsouza ▴ 10
11 results • Page 1 of 1
Recent ...
Replies
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by SamGG ▴ 350
Is useless the assumption that the majority of genes have no variation in expression (bearing in mind that they are distributed over the en…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0
Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre
Comment: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k
Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…
Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Votes
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
Awards • All
Scholar to James W. MacDonald 65k
Supporter to JKim • 0
Popular Question to Gordon Smyth 50k
Popular Question to Chris • 0
Supporter to Jonathan ▴ 10
Locations • All
EMBL Heidelberg, 3 minutes ago
United States, 3 minutes ago
France, 7 minutes ago
United States, 9 minutes ago
United States, 21 minutes ago
Traffic: 1038 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6