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Comment: DiffBind dba.report() output: Is "concentration" normalized? by Rory Stark ♦ 3.5k
As I understand it, you have two contrasts that share one group of samples. You expect the concentrations reported for the shared group to …
Comment: Removing rows (countData) from a DESeq Object by Bine • 0
Thank you I will check this documentation!
Comment: Removing rows (countData) from a DESeq Object by ATpoint • 470
> View(dds0) doesnt work Yes, that is expected. The DESeqDataSet is a container, not a specific assay itself so you first have to access t…
Comment: Removing rows (countData) from a DESeq Object by Bine • 0
Thank you very much. Sry for not explaining it clearly enough. It is great that the colData will be filtered automatically. What I want to…
Comment: Removing rows (countData) from a DESeq Object by ATpoint • 470
The DESeqDataSet is basically a SummarizedExperiment, so standard subsetting operations apply. The crux of SE is that you do not have to ma…
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