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40,282 results • Page 1 of 806
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Answer: Same methylation probe ID with different locus annotations in Illumina 27k and 4 by Kevin Blighe 2.5k
Hi, It seems that the manufacturer (Illumina) simply moved the target locus, which often occurs across array designs. In the case of c…
Answer: DESeq2, tximport normalization, normalization factors, size factors by Michael Love 32k
1) "counts(dds,normalized=TRUE)" returns counts that are corrected for library size and transcript length. Yes, and the indication is th…
Comment: DiffBind dba.report() output: Is "concentration" normalized? by Rory Stark ♦ 3.6k
As I understand it, you have two contrasts that share one group of samples. You expect the concentrations reported for the shared group to …
Comment: Removing rows (countData) from a DESeq Object by Bine • 0
Thank you I will check this documentation!
Comment: Removing rows (countData) from a DESeq Object by ATpoint • 470
> View(dds0) doesnt work Yes, that is expected. The DESeqDataSet is a container, not a specific assay itself so you first have to access t…
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