0
votes
1
answer
44
views
1
answer
alpha in lfcshrink?
deseq2 written 22 days ago by andrebolerbarros0 • updated 22 days ago by Michael Love20k
3
votes
1
answer
177
views
1
answer
EBImage computeFeatures error
ebimage image processing computefeatures written 22 days ago by Mathieu Gendarme10 • updated 22 days ago by Mike Smith3.1k
0
votes
1
answer
40
views
1
answer
Pre-filtering results influence on downstream analysis
rnaseq deseq2 written 22 days ago by andrebolerbarros0 • updated 22 days ago by Michael Love20k
0
votes
1
answer
77
views
1
answer
tximport and its version
stringtie tximport rna-seq analysis written 22 days ago by Mithil Gaikwad0 • updated 22 days ago by James W. MacDonald48k
1
vote
1
answer
67
views
1
answer
Focused gene set tests
gene set analysis gene set testing gene set enrichment analysis written 4 days ago by SB0 • updated 3 days ago by Gordon Smyth35k
0
votes
1
answer
34
views
1
answer
DGE Analysis between 3 conditions
rnaseq deseq2 written 5 days ago by evocanres0 • updated 5 days ago by Michael Love20k
0
votes
1
answer
50
views
1
answer
Using Wald test after lfcShrink (dds, contrast ())
deseq2 written 26 days ago by genome.editor0 • updated 26 days ago by Michael Love20k
0
votes
1
answer
50
views
1
answer
Functions listFilterValues and searchFilterValues are not working in biomaRt
biomart written 27 days ago by catscampos0 • updated 27 days ago by Mike Smith3.1k
2
votes
1
answer
43
views
1
answer
Help for Research Proposal
pathways bioinformatics drug development written 7 days ago by wajeehaejaz170 • updated 6 days ago by Steve Lianoglou12k
0
votes
1
answer
56
views
1
answer
Problem installing scater
R bioconductor scater biocmanager written 4 days ago by hfberg0 • updated 4 days ago by Aaron Lun21k
0
votes
1
answer
65
views
1
answer
Getting an error trying to do tximportData tutorial
deseq2 tximport written 26 days ago by mogasawara0 • updated 26 days ago by Michael Love20k
0
votes
1
answer
97
views
1
answer
0
votes
1
answer
47
views
1
answer
How to keep the genes whose counts are equal or greater than 10
deseq2 filtering written 22 days ago by n_h_780 • updated 22 days ago by James W. MacDonald48k
0
votes
1
answer
101
views
1
answer
DEXSeqHTML getListElement GRanges error
dexseq software error bug written 27 days ago by Lance Parsons0 • updated 20 days ago by nitesh.turaga130
2
votes
1
answer
54
views
1
answer
Split GRanges to GRangeList based on mcols value
granges written 26 days ago by unamourdeswann0 • updated 26 days ago by Michael Lawrence10k
1
vote
1
answer
71
views
1
answer
Do I have too many samples or are some samples causing issues?
deseq2 written 14 days ago by cmfield0 • updated 14 days ago by Michael Love20k
0
votes
1
answer
30
views
1
answer
Subset bam file in R
genomicranges rsamtools genomicalignments written 7 days ago by ferbecneu0 • updated 7 days ago by Michael Lawrence10k
1
vote
1
answer
98
views
1
answer
importing Tximport to DESeq2 for a time series experiment
deseq2 tximport written 26 days ago by ahmedaalkarim0 • updated 26 days ago by Michael Love20k
0
votes
1
answer
37
views
1
answer
DESeq2 then fdrtool
deseq2 fdrtool written 8 days ago by bioinfo0 • updated 8 days ago by Michael Love20k
1
vote
1
answer
85
views
1
answer
DeSeq2 with extremely variable samples
deseq2 written 8 days ago by Helene0 • updated 8 days ago by Michael Love20k
1
vote
1
answer
62
views
1
answer
Question regarding class imbalance and low sample size for DESeq2
deseq2 written 17 days ago by munna.uppal0 • updated 15 days ago by Michael Love20k
0
votes
1
answer
78
views
1
answer
How to access gene IDs associated with GO terms in GOSeq
go goseq ensemblid written 27 days ago by Darklings0 • updated 27 days ago by James W. MacDonald48k
2
votes
1
answer
77
views
1
answer
0
votes
1
answer
52
views
1
answer
1
vote
1
answer
52
views
1
answer
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