6
votes
2
answers
3.2k
views
8 follow
2
answers
remove microarray batch effects using Limma
microarray written 7.1 years ago by Xie, Zhi NIH/NHLBI [E]60 • updated 5 weeks ago by Gordon Smyth32k
10
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2
answers
2.5k
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7 follow
2
answers
using duplicateCorrelation with limma+voom for RNA-seq data
limma voom written 3.5 years ago by John Blischak120 • updated 2.5 years ago by Gordon Smyth32k
3
votes
1
answer
363
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6 follow
1
answer
2
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0
answers
381
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5 follow
0
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5
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0
answers
556
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5 follow
0
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3
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1
answer
1.1k
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5 follow
1
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Using DESeq2: experimental design and extracting results
deseq deseq2 written 3.5 years ago by bio200160 • updated 3.5 years ago by Michael Love15k
9
votes
1
answer
789
views
7 follow
1
answer
looping through a GRangesList object
genomicranges grangeslist written 22 months ago by Simon Anders3.4k • updated 22 months ago by Julian Gehring1.3k
11
votes
1
answer
410
views
7 follow
1
answer
How to remove more than two batches in my data-sets
rnaseq limma removebatcheffect() written 16 months ago by yi.huang30 • updated 16 months ago by Gordon Smyth32k
2
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0
answers
358
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5 follow
0
answers
3
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2
answers
882
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5 follow
2
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28
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4
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1.4k
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10 follow
4
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25
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2
answers
3.0k
views
2
answers
Normalization methodology in DESeq/DESeq2 vs edgeR
normalization edger deseq deseq2 written 2.0 years ago by Nik Tuzov60 • updated 2.0 years ago by Simon Anders3.4k
8
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2
answers
398
views
6 follow
2
answers
2
votes
1
answer
499
views
1
answer
Gene level exploratory data analysis from tximport results
edger deseq2 tximport written 17 months ago by Steve Lianoglou12k • updated 17 months ago by Michael Love15k
4
votes
1
answer
93
views
1
answer
Rsubread counting peaks ATACseq
rsubread narrowpeaks featurecounts atac-seq written 7 days ago by j.bergenstrahle70 • updated 6 days ago by Wei Shi2.7k
5
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0
answers
305
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0
answers
2
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1
answer
357
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1
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Deseq2 time series question,
rnaseq timecourse deseq2 written 12 months ago by cannedcanary0 • updated 12 months ago by Michael Love15k
4
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1
answer
97
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1
answer
2
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1
answer
639
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1
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5
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1
answer
539
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1
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5
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1
answer
692
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1
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1
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0
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1.1k
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0
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2
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1
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200
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1
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1
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0
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95
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4
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1
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107
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