10
votes
5
answers
1.9k
views
9 follow
5
answers
arrayQualityMetrics does not complete successfully
arrayqualitymetrics written 2.8 years ago by Jan-Niklas10 • updated 2.1 years ago by fmunoz10
6
votes
12
answers
7.8k
views
9 follow
12
answers
WGCNA for RNA-Seq Sample Set, Outliers, and Spearman correlation
wgcna sample size outliers written 3.8 years ago by brohawndg60 • updated 3.3 years ago by mh.manoj0
11
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2
answers
1.1k
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8 follow
2
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15
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2
answers
7.2k
views
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2
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18
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2
answers
3.8k
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8 follow
2
answers
Confidence intervals on edgeR logFC
edger statistics confidence interval written 4.2 years ago by ri.lars40 • updated 2.7 years ago by nwvidal0
10
votes
2
answers
2.9k
views
8 follow
2
answers
CAMERA error: $ operator not defined for this S4 class
camera software error written 3.4 years ago by scott.walmsley60 • updated 3.4 years ago by ckuhl20
20
votes
2
answers
10k
views
8 follow
2
answers
Mapping genome regions to gene symbols
gene symbol tcga cnv coordinate written 3.6 years ago by NS30 • updated 3.6 years ago by pshannon80
13
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2
answers
2.5k
views
8 follow
2
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19
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2
answers
2.2k
views
8 follow
2
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13
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2
answers
1.9k
views
8 follow
2
answers
10
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2
answers
12k
views
8 follow
2
answers
deseq2 filter the low counts
deseq2 lowcount written 3.8 years ago by aristotele_m20 • updated 2.2 years ago by pkachroo10
13
votes
6
answers
7.7k
views
8 follow
6
answers
8
votes
1
answer
20k
views
8 follow
1
answer
DESeq2 output explanation
deseq deseq2 written 4.1 years ago by francesca.defilippis60 • updated 4.1 years ago by Michael Love20k
7
votes
1
answer
3.5k
views
8 follow
1
answer
Renaming the seqlevels in a transcript database from GenomicFeatures
genomicfeatures written 4.5 years ago by Fong Chun Chan320 • updated 4.5 years ago by Sonali Arora370
10
votes
1
answer
2.5k
views
8 follow
1
answer
DEXSeq Usage and Expression Confusion
dexseq written 3.9 years ago by andrew.j.skelton73310 • updated 3.9 years ago by Simon Anders3.5k
24
votes
3
answers
2.9k
views
8 follow
3
answers
voom for spectral counts
proteomics limma massspectrometry voom spectral counts written 3.9 years ago by Ben Neely40 • updated 3.9 years ago by Gordon Smyth35k
11
votes
2
answers
5.1k
views
7 follow
2
answers
Differential expression analysis starting from TPM data
R tpm written 16 months ago by cahidora20 • updated 16 months ago by Gordon Smyth35k
0
votes
1
answer
818
views
7 follow
1
answer
granges() method for GenomicRanges objects akin to ranges()...
written 4.6 years ago by Tim Triche4.2k • updated 4.6 years ago by Jeff Johnston90
11
votes
1
answer
622
views
7 follow
1
answer
How to remove more than two batches in my data-sets
rnaseq limma removebatcheffect() written 2.4 years ago by yi.huang30 • updated 2.4 years ago by Gordon Smyth35k
1
vote
2
answers
1.9k
views
7 follow
2
answers
Problem installing BSgenome.Hsapiens.UCSC.hg19
software error written 3.3 years ago by mhwaldron10410 • updated 3.2 years ago by Arne Muller20
19
votes
2
answers
4.3k
views
7 follow
2
answers
Usability of ERCC spike-ins in standard RNAseq experiments
rnaseq deseq2 ercc written 2.1 years ago by mbeckste20 • updated 2.1 years ago by Simon Anders3.5k
9
votes
1
answer
6.6k
views
7 follow
1
answer
DESeq2 and shrinkage of log2 fold changes
deseq2 written 2.9 years ago by riccardo70 • updated 2.9 years ago by Michael Love20k
6
votes
1
answer
3.1k
views
7 follow
1
answer
biomaRt: error using useDataset or useMart
biomart software error usemart usedataset written 12 months ago by lpsantamaria40 • updated 12 months ago by Mike Smith3.1k
1
vote
1
answer
3.0k
views
7 follow
1
answer
limma-voom
rnaseq normalization limma edger written 4.8 years ago by Ming Yi350 • updated 4.8 years ago by Gordon Smyth35k
0
votes
1
answer
1.5k
views
7 follow
1
answer
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