18
votes
2
answers
3.6k
views
8 follow
2
answers
Confidence intervals on edgeR logFC
edger statistics confidence interval written 4.0 years ago by ri.lars40 • updated 2.5 years ago by nwvidal0
13
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2
answers
20k
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2
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heatmap.2() get matrix after hierarchical clustering
clustering written 5.9 years ago by Guest User12k • updated 5.9 years ago by Thomas Girke1.6k
13
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2
answers
1.7k
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8 follow
2
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20
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2
answers
9.0k
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8 follow
2
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Mapping genome regions to gene symbols
gene symbol tcga cnv coordinate written 3.4 years ago by NS30 • updated 3.4 years ago by pshannon80
13
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2
answers
2.3k
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8 follow
2
answers
10
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2
answers
2.8k
views
8 follow
2
answers
CAMERA error: $ operator not defined for this S4 class
camera software error written 3.2 years ago by scott.walmsley60 • updated 3.2 years ago by ckuhl20
13
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6
answers
7.2k
views
8 follow
6
answers
7
votes
1
answer
3.2k
views
8 follow
1
answer
Renaming the seqlevels in a transcript database from GenomicFeatures
genomicfeatures written 4.2 years ago by Fong Chun Chan320 • updated 4.2 years ago by Sonali Arora370
11
votes
2
answers
1.0k
views
8 follow
2
answers
24
votes
3
answers
2.7k
views
8 follow
3
answers
voom for spectral counts
proteomics limma massspectrometry voom spectral counts written 3.6 years ago by Ben Neely40 • updated 3.6 years ago by Gordon Smyth35k
19
votes
2
answers
3.9k
views
7 follow
2
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Usability of ERCC spike-ins in standard RNAseq experiments
rnaseq deseq2 ercc written 23 months ago by mbeckste20 • updated 23 months ago by Simon Anders3.5k
11
votes
2
answers
3.7k
views
7 follow
2
answers
Differential expression analysis starting from TPM data
R tpm written 13 months ago by cahidora20 • updated 13 months ago by Gordon Smyth35k
0
votes
1
answer
487
views
7 follow
1
answer
Minfi read.metharray error in checkslotassignment
minfi read.metharray.exp written 12 months ago by lily0 • updated 8 weeks ago by shubhamrock199980
3
votes
2
answers
12k
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7 follow
2
answers
Problems updating Bioconductor with R 3.2.0
r update upgrade written 3.4 years ago by daniil.sarkisyan10 • updated 3.4 years ago by Dan Tenenbaum ♦♦ 8.2k
0
votes
1
answer
1.4k
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7 follow
1
answer
6
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0
answers
1.1k
views
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0
answers
6
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1
answer
2.4k
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7 follow
1
answer
biomaRt: error using useDataset or useMart
biomart software error usemart usedataset written 9 months ago by lpsantamaria40 • updated 9 months ago by Mike Smith2.9k
11
votes
5
answers
6.6k
views
7 follow
5
answers
RNA-Seq, generate batch-free count matrix
edger sva written 4.2 years ago by Brian Haas60 • updated 3.9 years ago by Gordon Smyth35k
0
votes
2
answers
836
views
7 follow
2
answers
Wow, what have I done
written 10.8 years ago by Loren Engrav1.0k • updated 10.8 years ago by Marcus G. Daniels30
0
votes
5
answers
1.2k
views
7 follow
5
answers
package 'ChAMP' demo/test code fails at champ.CNA()
software error written 3.7 years ago by Hamid Bolouri90 • updated 20 months ago by Yuan Tian80
8
votes
3
answers
2.7k
views
7 follow
3
answers
Pathview: *** caught segfault *** cause 'memory not mapped'
pathview segfault written 2.8 years ago by user3188830 • updated 2.2 years ago by redpick1340
0
votes
1
answer
749
views
7 follow
1
answer
granges() method for GenomicRanges objects akin to ranges()...
written 4.4 years ago by Tim Triche4.2k • updated 4.4 years ago by Jeff Johnston90
9
votes
2
answers
10.0k
views
7 follow
2
answers
deseq2 filter the low counts
deseq2 lowcount written 3.6 years ago by aristotele_m20 • updated 23 months ago by pkachroo10
12
votes
1
answer
1.5k
views
7 follow
1
answer
edgeR glmLRT with test="F"?
edger differential expression dge written 3.3 years ago by Ryan C. Thompson6.8k • updated 3.3 years ago by Aaron Lun21k
0
votes
1
answer
819
views
7 follow
1
answer
more stupid *Ranges questions...
transcription chippeakanno genomicranges written 7.0 years ago by Tim Triche4.2k • updated 7.0 years ago by Michael Lawrence10k
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