8
votes
1
answer
5.0k
views
8 follow
1
answer
DESEq2 comparison with mulitple cell types under 2 conditions
deseq2 multiple factor design written 2.8 years ago by kmu00430 • updated 2.8 years ago by Michael Love16k
18
votes
2
answers
3.0k
views
8 follow
2
answers
Confidence intervals on edgeR logFC
edger statistics confidence interval written 3.4 years ago by ri.lars40 • updated 22 months ago by nwvidal0
7
votes
1
answer
2.7k
views
8 follow
1
answer
Renaming the seqlevels in a transcript database from GenomicFeatures
genomicfeatures written 3.7 years ago by Fong Chun Chan320 • updated 3.7 years ago by Sonali Arora370
24
votes
3
answers
2.3k
views
8 follow
3
answers
voom for spectral counts
proteomics limma massspectrometry voom spectral counts written 3.1 years ago by Ben Neely40 • updated 3.1 years ago by Gordon Smyth32k
18
votes
2
answers
1.8k
views
8 follow
2
answers
10
votes
2
answers
2.4k
views
8 follow
2
answers
CAMERA error: $ operator not defined for this S4 class
camera software error written 2.7 years ago by scott.walmsley60 • updated 2.6 years ago by ckuhl20
13
votes
2
answers
17k
views
8 follow
2
answers
heatmap.2() get matrix after hierarchical clustering
clustering written 5.4 years ago by Guest User12k • updated 5.4 years ago by Thomas Girke1.6k
17
votes
2
answers
1.5k
views
7 follow
2
answers
Limma camera function never gives any differentially expressed gene sets
limma written 2.6 years ago by chris86360 • updated 6 months ago by misterrandyclark0
9
votes
1
answer
2.2k
views
7 follow
1
answer
5
votes
1
answer
1.2k
views
7 follow
1
answer
Trouble with Tximport
salmon tximport written 22 months ago by smithng121530 • updated 22 months ago by Michael Love16k
0
votes
1
answer
550
views
7 follow
1
answer
2
votes
4
answers
2.6k
views
7 follow
4
answers
Minfi error in reading Basename column
minfi methylation written 2.5 years ago by parap0 • updated 16 months ago by SplittingInfinity10
21
votes
2
answers
22k
views
7 follow
2
answers
conceptual question about FDR, FDR adjusted p-value and q-value
qvalue fdr written 5.2 years ago by Jack Luo340 • updated 16 months ago by Gordon Smyth32k
11
votes
6
answers
1.6k
views
7 follow
6
answers
7
votes
1
answer
3.5k
views
7 follow
1
answer
Removing batch effects with sva and combat using the sva package
regression limma sva written 6.2 years ago by Jeff Leek500 • updated 6.2 years ago by Andrew Teschendorff60
0
votes
2
answers
650
views
7 follow
2
answers
Wow, what have I done
written 10.2 years ago by Loren Engrav1.0k • updated 10.2 years ago by Marcus G. Daniels30
0
votes
1
answer
1.2k
views
7 follow
1
answer
6
votes
0
answers
977
views
7 follow
0
answers
8
votes
3
answers
1.8k
views
7 follow
3
answers
Pathview: *** caught segfault *** cause 'memory not mapped'
pathview segfault written 2.2 years ago by user3188830 • updated 19 months ago by redpick1340
11
votes
1
answer
456
views
7 follow
1
answer
How to remove more than two batches in my data-sets
rnaseq limma removebatcheffect() written 19 months ago by yi.huang30 • updated 19 months ago by Gordon Smyth32k
3
votes
2
answers
11k
views
7 follow
2
answers
Problems updating Bioconductor with R 3.2.0
r update upgrade written 2.9 years ago by daniil.sarkisyan10 • updated 2.9 years ago by Dan Tenenbaum ♦♦ 8.2k
0
votes
5
answers
1.1k
views
7 follow
5
answers
package 'ChAMP' demo/test code fails at champ.CNA()
software error written 3.1 years ago by Hamid Bolouri90 • updated 13 months ago by Yuan Tian70
9
votes
5
answers
5.5k
views
7 follow
5
answers
RNA-Seq, generate batch-free count matrix
edger sva written 3.6 years ago by Brian Haas50 • updated 3.4 years ago by Gordon Smyth32k
0
votes
1
answer
601
views
7 follow
1
answer
granges() method for GenomicRanges objects akin to ranges()...
written 3.8 years ago by Tim Triche4.2k • updated 3.8 years ago by Jeff Johnston90
1
vote
2
answers
1.5k
views
7 follow
2
answers
Problem installing BSgenome.Hsapiens.UCSC.hg19
software error written 2.5 years ago by mhwaldron10410 • updated 2.4 years ago by Arne Muller20
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