3
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2
answers
1.7k
views
2
answers
1
vote
1
answer
1.6k
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1
answer
Upgrade to Bioconductor 3.4 - problems with R
bioclite r update upgrade written 12 months ago by Lna0 • updated 12 months ago by James W. MacDonald45k
1
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2
answers
1.6k
views
2
answers
DiffBind for ATAC-seq
diffbind peak finding macs atac-seq macs2 written 14 months ago by igor20 • updated 8 months ago by kennethcondon200710
10
votes
1
answer
1.6k
views
5 follow
1
answer
1
vote
2
answers
1.6k
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2
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Ballgown up and down regulated genes
differential expression ballgown written 22 months ago by psbpedrobarbosa0 • updated 6 months ago by kapeelc0
1
vote
1
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1.6k
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1
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DESeq2, plotting residuals vs.fitted values
deseq2 written 3.3 years ago by Mike Miller70 • updated 9 months ago by Michael Love14k
15
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1
answer
1.5k
views
1
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Combining RangedData objects is broken (IRanges 2.8.1 with R version 3.3.3 RC)
iranges written 8 months ago by mdoering10 • updated 8 months ago by Martin Morgan ♦♦ 20k
14
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6
answers
1.5k
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10 follow
6
answers
Diffbind: edgeR or DESeq2 ?
edger diffbind deseq2 medip-seq written 20 months ago by florian.noack60 • updated 18 days ago by Rory Stark2.1k
8
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2
answers
1.4k
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2
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17
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2
answers
1.3k
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7 follow
2
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Limma camera function never gives any differentially expressed gene sets
limma written 2.3 years ago by chris86320 • updated 3 months ago by misterrandyclark0
2
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2
answers
1.3k
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5 follow
2
answers
9
votes
2
answers
1.2k
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5 follow
2
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What to use: PCA or tSNE dimension reduction in DESeq2 analysis?
rnaseq deseq2 pca tsne written 4 months ago by s.w.vanderlaan20 • updated 4 months ago by Kushal K Dey10
0
votes
2
answers
1.2k
views
2
answers
Error in installing Gviz
written 4.1 years ago by 马磊10 • updated 5 months ago by Sameet Mehta20
0
votes
1
answer
1.2k
views
1
answer
Expected counts from RSEM in DESeq2
deseq2 rsem expected_counts raw_counts written 10 months ago by chudar.chudar0 • updated 10 months ago by Michael Love14k
2
votes
2
answers
1.1k
views
2
answers
Heatmap of a subset of genes
heatmap written 19 months ago by giroudpaul30 • updated 11 months ago by caroline0
0
votes
1
answer
1.1k
views
1
answer
Limma - RNA-Seq DE genes - Quantile normalized log transformed RPKM data
limma written 6.0 years ago by Avinash S40 • updated 5 months ago by Gordon Smyth32k
2
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0
answers
1.1k
views
0
answers
5
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2
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1.1k
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2
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3
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1
answer
1.1k
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1
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2
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3
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1.1k
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3
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problem with cummeRbund using latest R version
cummerbund written 3 months ago by mmateos0 • updated 8 weeks ago by serenaspartano0
22
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3
answers
1.0k
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8 follow
3
answers
4
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0
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1.0k
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0
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3
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4
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1.0k
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4
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Gviz: How to color parts of transcript in BiomartGeneRegionTrack?
gviz written 21 months ago by stianlagstad70 • updated 11 months ago by florian.hahne@novartis.com1.5k
0
votes
3
answers
1.0k
views
7 follow
3
answers
error in SRAdb
sradb written 3.3 years ago by Faryabi, Robert NIH/NCI [F]30 • updated 7 weeks ago by djlemas0
7
votes
1
answer
1.0k
views
1
answer
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