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Can a expressed gene dataset yielded after CPM be used in DESeq2 and EdgeR?
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DESeq
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3
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6
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Mistake in Cook's distance calculation in DESeq2 or am I missing something?
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2.7 years ago phil.xie • 0
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2.7 years ago Luca • 0
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0
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Confusing DSS outputs with smoothing (DMLtest)
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2.7 years ago Weisheng • 0
3
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5
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How to annotate genes from results of DiffBind
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Access Ensembl GRCH38 Version 87 Using BiomaRt
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2.7 years ago Chris ▴ 20
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3
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2.7 years ago Luca • 0
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How to get around the warning message: mzR has been built against a different Rcpp version
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LmFit error in EPIC methylation array analysis, Minfi
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6
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15
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2.7 years ago f_rahmdani • 0
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2.7 years ago christian.dina • 0
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2.7 years ago christian.dina • 0
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HiCDCPlus extract_hic_eigenvectors() only works with larger bin sizes (> =250kb )?
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updated 2.5 years ago by • 0 • written 2.7 years ago by • 0
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Latest version of ggtree (3.6.2) unavailable on Anaconda. Only 3.6.0 exists.
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updated 17 months ago by • 0 • written 2.7 years ago by ▴ 10
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Multiple issues reading in peak sets with Diffbind
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Reducing dataset size to improve run time for fitGAM in tradeSeq
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limma with or without intercept gives different results
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2.7 years ago Sydney • 0
46,691 results • Page 56 of 934
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Comment: DECIPHER DesignProbes unable to design FISH-probes by Erik Wright ▴ 150
Are the sequences aligned (i.e., the same width) before running `TileSeqs()`?
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BTW, I tested with no issue on MacOS ARM on our previous github issue.
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The DESeq2 error makes sense, as we've talked about, given that the simple `bplapply` isn't working in your setup. Maybe give the traceb…
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For PTM analysis, the usual quantification command dpcQuant() is replaced by dpcImpute(). Otherwise the limpa pipeline is the same as for a…
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The first step is to update to the current versions of R/Bioconductor and try again. It's possible that you have run into a bug that's alre…
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