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1
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3
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304
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3
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lpsymphony compilation trouble
lpsymphony written 8 months ago by mark.russo • 10 • updated 3 days ago by yadongxue • 0
7
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2
answers
97
views
2
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Dispersion fit and p-value distributions
rnaseq deseq2 fdrtool written 3 days ago by C T • 90 • updated 2 days ago by Ryan C. Thompson ♦ 6.9k
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2
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39
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CpG density in MEDIPS
medips cpg written 3 days ago by saripalligautam86 • 10
2
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2
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Queries related to limma package based analysis of masspectrometry data
limma written 3 days ago by manubhaikp • 10 • updated 3 days ago by Gordon Smyth ♦ 35k
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2
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105
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DESeq2 Time Series and "control" condition
deseq2 time course written 3 days ago by sum732 • 0
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2
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47
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2
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Merge column to SummarizedExperiment from other dataframe
summarizedexperiment illimina 450k methylation rangedsummarizedexperiment written 4 days ago by s.w.vanderlaan • 20
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1
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59
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1
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cohen's d in edgeR
edger effect size cohen d written 3 days ago by mali salmon • 330 • updated 3 days ago by Aaron Lun • 21k
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1
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41
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1
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NCBI hg38 transcript annotation package GenomicFeatures
genomicfeatures written 6 days ago by zoe.ward • 0 • updated 5 days ago by James W. MacDonald ♦ 48k
3
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1
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82
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1
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Using deseq2 with batch effects and classification as downstream analysis
classification deseq2 batch effect written 7 days ago by Maryam • 0 • updated 6 days ago by Michael Love ♦ 19k
4
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1
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46
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1
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limma barcodeplot(): calculation of enrichment score
limma gene set enrichment analysis written 3 days ago by khandarius • 20 • updated 3 days ago by Aaron Lun • 21k
1
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1
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43
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1
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Error installing EWCE package
package installation ewce not available (for r version 3.5.0) written 4 days ago by avoda • 0 • updated 4 days ago by Mike Smith • 3.0k
1
vote
1
answer
97
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1
answer
Actually meaning of log2FoldChange, p-value & padj in DESeq2 results
deseq2 rna-seq written 7 days ago by hffqyd • 0
0
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1
answer
51
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1
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Differential Expression of GSVA Enrichment Scores - pre-processing with voomWithQualityWeights and GSVA follow-up with lmfit
limma gsva lmfit voomwithqualityweights written 6 days ago by seblatt • 0 • updated 6 days ago by Robert Castelo • 2.2k
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1
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34
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1
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Copy ratio close to but not exactly 1
purecn copyratio written 4 days ago by twtoal • 0 • updated 3 days ago by markus.riester • 110
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1
answer
43
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1
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Need update access to package "banocc"
software error written 5 days ago by george.weingart • 0 • updated 5 days ago by Mike Smith • 3.0k
5
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1
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52
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1
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How to set up appropriate analysis using sample type and condition for DESeq2
deseq2 design differential gene expression written 4 days ago by newbio17 • 0 • updated 3 days ago by Michael Love ♦ 19k
1
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1
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93
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1
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DESeq2 for large de novo transcripts assembly
deseq2 written 6 days ago by Emiliano Canton • 10 • updated 6 days ago by Michael Love ♦ 19k
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1
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85
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1
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browseGenome with Shiny
rtracklayer shiny browsegenome written 10 days ago by vivek82 • 0 • updated 5 days ago by Michael Lawrence ♦ 10k
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1
answer
41
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1
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plotMA in deseq2
deseq2 written 4 days ago by gv • 40 • updated 4 days ago by Michael Love ♦ 19k
2
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1
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57
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1
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Recommendations for combining multiple 10x runs into one SingleCellExperiment
simplesinglecell singlecellexperiment dropletutils written 6 days ago by Peter Hickey • 380 • updated 6 days ago by Aaron Lun • 21k
3
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1
answer
85
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1
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Differential analysis of multiple samples with different time points
diffbind R atac-seq written 7 days ago by firas • 0 • updated 5 days ago by Rory Stark • 2.6k
0
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1
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28
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1
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Can not install MINFI in WinDow 10 correctly
minfi error: package ‘bumphunter’ could not be loaded written 5 days ago by sunday2009 • 0 • updated 5 days ago by James W. MacDonald ♦ 48k
0
votes
1
answer
38
views
1
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SNPrelate, snpgdsFst is excluding all snps on non-autosomes, how can I get it to stop doing that?
snprelate fst written 6 days ago by cav3gh • 0 • updated 6 days ago by zhengx • 20
0
votes
1
answer
45
views
1
answer
CpG site not annotated with annotatr
cpg annotatr written 4 days ago by soli5 • 0 • updated 4 days ago by rcavalca • 120
0
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1
answer
67
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1
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PCA plot of variance stabilized transformation of normalized counts in limma
edger deseq2 limma-voom written 4 days ago by Raymond • 0 • updated 4 days ago by Steve Lianoglou ♦ 12k
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