11
votes
11
answers
4.1k
views
18 follow
11
answers
readCufflinks problem with extdata
cummerbund written 7 months ago by biakemi40 • updated 5 months ago by markus.ball10
28
votes
7
answers
2.0k
views
14 follow
7
answers
[FIXED] Error in Gviz (actually, rtracklayer) | IdeogramTrack
rtracklayer gviz written 12 months ago by Ramiro Magno80 • updated 7 months ago by aina.jene10
10
votes
3
answers
3.8k
views
13 follow
3
answers
pre-ranked GSEA within R?
written 4.1 years ago by Daniel Schmolze50 • updated 18 months ago by assaron140
10
votes
16
answers
7.2k
views
13 follow
16
answers
RDAVIDWebService Error 301: Moved Permanently
rdavidwebservice david written 2.6 years ago by Vivek.b40 • updated 2.1 years ago by Cristobal Fresno Rodríguez350
15
votes
0
answers
4.1k
views
13 follow
0
answers
19
votes
2
answers
3.4k
views
12 follow
2
answers
biomaRt no longer works with proxy after upgrade
biomart rcurl proxy written 2.3 years ago by enricoferrero560 • updated 2.3 years ago by hygine140
13
votes
3
answers
3.4k
views
12 follow
3
answers
New function lfcShrink() in DESeq2
deseq2 written 9 months ago by Michael Love16k
17
votes
4
answers
3.6k
views
10 follow
4
answers
Removing continuous covariate effects in limma analysis
microarray limma written 2.9 years ago by Pauly Lin80 • updated 5 months ago by Gordon Smyth32k
14
votes
6
answers
1.7k
views
10 follow
6
answers
Diffbind: edgeR or DESeq2 ?
edger diffbind deseq2 medip-seq written 23 months ago by florian.noack60 • updated 3 months ago by Rory Stark2.3k
28
votes
4
answers
1.7k
views
10 follow
4
answers
17
votes
6
answers
6.5k
views
10 follow
6
answers
Problem with biomart's listMarts function
biomart bug written 2.3 years ago by Johannes Rainer1.2k • updated 22 months ago by Paul Shannon360
9
votes
2
answers
4.7k
views
10 follow
2
answers
5
votes
12
answers
6.3k
views
9 follow
12
answers
WGCNA for RNA-Seq Sample Set, Outliers, and Spearman correlation
wgcna sample size outliers written 3.0 years ago by brohawndg50 • updated 2.5 years ago by mh.manoj0
11
votes
3
answers
5.4k
views
9 follow
3
answers
Nanostring analysis with limma
limma nanostring written 2.8 years ago by mali salmon320 • updated 2.8 years ago by ker610
5
votes
1
answer
985
views
9 follow
1
answer
11
votes
2
answers
2.2k
views
9 follow
2
answers
24
votes
3
answers
1.4k
views
9 follow
3
answers
11
votes
2
answers
2.9k
views
9 follow
2
answers
using duplicateCorrelation with limma+voom for RNA-seq data
limma voom written 3.8 years ago by John Blischak130 • updated 2.8 years ago by Gordon Smyth32k
7
votes
1
answer
2.7k
views
8 follow
1
answer
Renaming the seqlevels in a transcript database from GenomicFeatures
genomicfeatures written 3.7 years ago by Fong Chun Chan320 • updated 3.7 years ago by Sonali Arora370
13
votes
6
answers
6.1k
views
8 follow
6
answers
9
votes
5
answers
1.5k
views
8 follow
5
answers
arrayQualityMetrics does not complete successfully
arrayqualitymetrics written 24 months ago by Jan-Niklas10 • updated 15 months ago by fmunoz10
11
votes
2
answers
835
views
8 follow
2
answers
13
votes
2
answers
1.3k
views
8 follow
2
answers
6
votes
2
answers
3.5k
views
8 follow
2
answers
remove microarray batch effects using Limma
microarray written 7.3 years ago by Xie, Zhi NIH/NHLBI [E]60 • updated 4 months ago by Gordon Smyth32k
8
votes
1
answer
5.0k
views
8 follow
1
answer
DESEq2 comparison with mulitple cell types under 2 conditions
deseq2 multiple factor design written 2.8 years ago by kmu00430 • updated 2.8 years ago by Michael Love16k
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