18
votes
0
answers
4.8k
views
19 follow
0
answers
11
votes
11
answers
5.4k
views
18 follow
11
answers
readCufflinks problem with extdata
cummerbund written 14 months ago by biakemi40 • updated 11 months ago by markus.ball10
12
votes
16
answers
8.2k
views
14 follow
16
answers
RDAVIDWebService Error 301: Moved Permanently
rdavidwebservice david written 3.2 years ago by Vivek.b50 • updated 8 weeks ago by gevermalc0
15
votes
3
answers
6.0k
views
14 follow
3
answers
New function lfcShrink() in DESeq2
deseq2 written 16 months ago by Michael Love19k
28
votes
7
answers
2.4k
views
14 follow
7
answers
[FIXED] Error in Gviz (actually, rtracklayer) | IdeogramTrack
rtracklayer gviz written 19 months ago by Ramiro Magno100 • updated 14 months ago by aina.jene10
10
votes
3
answers
5.2k
views
13 follow
3
answers
pre-ranked GSEA within R?
written 4.7 years ago by Daniel Schmolze50 • updated 2.1 years ago by assaron150
19
votes
2
answers
3.7k
views
12 follow
2
answers
biomaRt no longer works with proxy after upgrade
biomart rcurl proxy written 2.9 years ago by enricoferrero570 • updated 2.9 years ago by hygine140
13
votes
3
answers
6.3k
views
12 follow
3
answers
Nanostring analysis with limma
limma nanostring written 3.4 years ago by mali salmon330 • updated 3.4 years ago by ker610
17
votes
0
answers
4.2k
views
11 follow
0
answers
Tutorial: Bioconductor on Coursera
tutorial mooc written 3.0 years ago by Kasper Daniel Hansen6.4k • updated 6 months ago by ifmrdatascience0
10
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2
answers
5.5k
views
11 follow
2
answers
17
votes
4
answers
4.6k
views
10 follow
4
answers
Removing continuous covariate effects in limma analysis
microarray limma written 3.5 years ago by Pauly Lin80 • updated 12 months ago by Gordon Smyth35k
26
votes
2
answers
28k
views
10 follow
2
answers
conceptual question about FDR, FDR adjusted p-value and q-value
qvalue fdr written 5.8 years ago by Jack Luo370 • updated 23 months ago by Gordon Smyth35k
28
votes
4
answers
2.3k
views
10 follow
4
answers
14
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6
answers
2.3k
views
10 follow
6
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Diffbind: edgeR or DESeq2 ?
edger diffbind deseq2 medip-seq written 2.5 years ago by florian.noack60 • updated 10 months ago by Rory Stark2.5k
21
votes
6
answers
7.4k
views
10 follow
6
answers
Problem with biomart's listMarts function
biomart bug written 2.9 years ago by Johannes Rainer1.3k • updated 2.4 years ago by Paul Shannon360
9
votes
1
answer
7.7k
views
10 follow
1
answer
DESEq2 comparison with mulitple cell types under 2 conditions
deseq2 multiple factor design written 3.4 years ago by kmu00440 • updated 3.4 years ago by Michael Love19k
13
votes
2
answers
4.0k
views
9 follow
2
answers
using duplicateCorrelation with limma+voom for RNA-seq data
limma voom written 4.3 years ago by John Blischak140 • updated 3.4 years ago by Gordon Smyth35k
5
votes
12
answers
7.3k
views
9 follow
12
answers
WGCNA for RNA-Seq Sample Set, Outliers, and Spearman correlation
wgcna sample size outliers written 3.6 years ago by brohawndg50 • updated 3.0 years ago by mh.manoj0
5
votes
1
answer
1.9k
views
9 follow
1
answer
10
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5
answers
1.8k
views
9 follow
5
answers
arrayQualityMetrics does not complete successfully
arrayqualitymetrics written 2.6 years ago by Jan-Niklas10 • updated 22 months ago by fmunoz10
24
votes
3
answers
2.3k
views
9 follow
3
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11
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2
answers
2.8k
views
9 follow
2
answers
20
votes
2
answers
9.0k
views
8 follow
2
answers
Mapping genome regions to gene symbols
gene symbol tcga cnv coordinate written 3.4 years ago by NS30 • updated 3.4 years ago by pshannon80
13
votes
6
answers
7.2k
views
8 follow
6
answers
11
votes
2
answers
1.0k
views
8 follow
2
answers
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