14
votes
6
answers
1.5k
views
10 follow
6
answers
Diffbind: edgeR or DESeq2 ?
edger diffbind deseq2 medip-seq written 20 months ago by florian.noack60 • updated 22 days ago by Rory Stark2.1k
4
votes
4
answers
2.6k
views
6 follow
4
answers
1
vote
1
answer
100
views
5 follow
1
answer
update TCGAbiolinks to version 3.6 and GDCquery doesn't work
software error tcgabiolinks written 16 days ago by sechenmo0 • updated 16 days ago by eshelden20
1
vote
2
answers
100
views
2
answers
Standardizing gene symbols
R written 1 day ago by Nithisha10 • updated 14 hours ago by Gordon Smyth32k
1
vote
2
answers
107
views
2
answers
4
votes
1
answer
357
views
1
answer
3
votes
0
answers
100
views
0
answers
3
votes
1
answer
117
views
1
answer
clusterProfiler - Non model organism
clusterprofiler written 21 days ago by rozanskide10 • updated 21 days ago by Guangchuang Yu800
1
vote
1
answer
93
views
1
answer
PCA from TPM
pca tpm tximport written 28 days ago by tanyabioinfo10
2
votes
1
answer
146
views
1
answer
Upgrade to 3.6 - can't seem to get past Bioconductor 3.5
bioclite bioconductor written 23 days ago by barb.bryant10 • updated 22 days ago by shepherl ♦♦ 510
2
votes
1
answer
93
views
1
answer
3
votes
1
answer
86
views
1
answer
Explainnation of featureCounts in-built annotation?
rnaseq annotation featurecounts written 27 days ago by Claire0 • updated 24 days ago by Wei Shi2.7k
4
votes
1
answer
93
views
1
answer
Rsubread counting peaks ATACseq
rsubread narrowpeaks featurecounts atac-seq written 8 days ago by j.bergenstrahle70 • updated 7 days ago by Wei Shi2.7k
3
votes
1
answer
133
views
1
answer
3
votes
2
answers
130
views
2
answers
DESeq2 dispersion and p-value histograms
rnaseq deseq2 dispersion fdrtool written 27 days ago by rrcutler30 • updated 23 days ago by Bernd Klaus470
2
votes
1
answer
125
views
1
answer
Volcano Plot (highlighting top genes in a different color)
volcanoplot written 16 days ago by Nithisha10 • updated 16 days ago by thokall60
0
votes
0
answers
87
views
0
answers
0
votes
0
answers
92
views
0
answers
1
vote
2
answers
109
views
2
answers
0
votes
1
answer
133
views
1
answer
1
vote
1
answer
90
views
1
answer
Difference between SummarizeOverlaps and HTSeq
R summarizeoverlaps htseqcounts written 23 days ago by Walter F. Baumann 10 • updated 21 days ago by thokall60
4
votes
3
answers
472
views
3
answers
Choosing a threshold for minimum counts in RNAseq
rnaseq deseq2 written 17 months ago by laianavarromartin10 • updated 8 days ago by Michael Love15k
0
votes
1
answer
39
views
1
answer
0
votes
2
answers
181
views
2
answers
question on GO analysis using clusterProfiler
clusterprofiler geneontology written 15 days ago by giuseppe05250 • updated 13 days ago by thokall60
0
votes
2
answers
283
views
2
answers
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