30
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2
answers
30k
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14 follow
2
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conceptual question about FDR, FDR adjusted p-value and q-value
qvalue fdr written 5.9 years ago by Jack Luo390 • updated 2.1 years ago by Gordon Smyth35k
5
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2
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24k
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6 follow
2
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[DESEQ2] How to access the normalized data of a DESeqDataSet
deseq2 written 3.7 years ago by john40 • updated 3.7 years ago by Steve Lianoglou12k
0
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4
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24k
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4
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how to set R memory limit
written 6.9 years ago by wang peter2.0k • updated 6.9 years ago by Sunny Yu Liu80
13
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2
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21k
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9 follow
2
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heatmap.2() get matrix after hierarchical clustering
clustering written 6.1 years ago by Guest User12k • updated 6.1 years ago by Thomas Girke1.7k
0
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0
answers
19k
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0
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1
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2
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19k
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2
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error in hclust function
written 6.5 years ago by Alyaa Mahmoud440 • updated 6.5 years ago by Thomas Girke1.7k
0
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1
answer
19k
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1
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no method for coercing S4 class to a vector
written 4.2 years ago by Guest User12k • updated 4.2 years ago by Andrzej Oleś720
5
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1
answer
19k
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5 follow
1
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DESeq2 output explanation
deseq deseq2 written 4.0 years ago by francesca.defilippis40 • updated 4.0 years ago by Michael Love20k
2
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1
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18k
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1
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Row labels in a heatmap
microarray written 6.3 years ago by Liat Shavit Grievink60 • updated 6.3 years ago by James W. MacDonald48k
0
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1
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17k
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1
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Upgrading Bioconductor using BiocUpgrade
biocinstaller written 6.1 years ago by Lavinia Gordon480 • updated 6.1 years ago by Dan Tenenbaum ♦♦ 8.2k
0
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1
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16k
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1
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Error in plot.window(...) : need finite 'xlim' values
written 10.0 years ago by T Joshi90 • updated 10.0 years ago by Sean Davis21k
11
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1
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15k
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1
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RPKM, CPM and TMM
rnaseq edger differential expression written 3.4 years ago by Pauly Lin80 • updated 3.4 years ago by Aaron Lun21k
5
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3
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14k
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3
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BLAST in R
written 7.5 years ago by Zoha Moztarzadeh20 • updated 2.9 years ago by mhahsler20
0
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1
answer
12k
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1
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Unable to find an inherited method for function ‘exprs’
biobase geoquery virtualarray written 5.3 years ago by Dave Tang210 • updated 5.3 years ago by Wolfgang Huber13k
3
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2
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12k
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7 follow
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Problems updating Bioconductor with R 3.2.0
r update upgrade written 3.6 years ago by daniil.sarkisyan10 • updated 3.6 years ago by Dan Tenenbaum ♦♦ 8.2k
0
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4
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12k
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4
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installation packages
written 5.2 years ago by fran vino40 • updated 5.2 years ago by Steve Lianoglou12k
1
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1
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11k
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1
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reading fasta file into R
biostrings written 6.3 years ago by Guest User12k • updated 6.3 years ago by Vincent J. Carey, Jr.6.2k
9
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2
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11k
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7 follow
2
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deseq2 filter the low counts
deseq2 lowcount written 3.7 years ago by aristotele_m20 • updated 2.1 years ago by pkachroo10
0
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2
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11k
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5 follow
2
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Fine tuning heatmap.2 graphics
microarray written 12.7 years ago by Marc Saric70 • updated 12.7 years ago by Wittner, Ben290
0
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1
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11k
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1
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EdgeR LogCpm and LogFC values calculation
edger written 4.8 years ago by Gordon Smyth35k • updated 4.8 years ago by Koen Van den Berge120
2
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2
answers
10k
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2
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Limma design and contrast matrix question.
microarray regression limma written 4.8 years ago by Matthew Thornton290 • updated 4.8 years ago by James W. MacDonald48k
8
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2
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10k
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5 follow
2
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Differential expression of RNA-seq data using limma and voom()
limma written 5.0 years ago by Jon Bråte150 • updated 2.3 years ago by Gordon Smyth35k
11
votes
0
answers
10k
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5 follow
0
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10
votes
2
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10k
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2
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FDR and padj in deseq and edger
edger deseq2 written 3.0 years ago by tonja.r40 • updated 3.0 years ago by Gordon Smyth35k
12
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3
answers
10k
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7 follow
3
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