3
votes
4
answers
8.3k
views
5 follow
4
answers
DESeq2 installation error
installation written 2.8 years ago by seeker0 • updated 8 months ago by Cheng-Yuan Kao80
0
votes
2
answers
7.8k
views
2
answers
Normalization by DEseq
genetics normalization deseq written 7.7 years ago by Rui Luo20 • updated 3 months ago by diannedai0
18
votes
4
answers
6.2k
views
4
answers
DESeq2 for ChIP-seq differential peaks
chipseq deseq deseq2 written 2.8 years ago by tangming200590 • updated 11 months ago by k.vitting.seerup20
4
votes
3
answers
5.1k
views
3
answers
Limma: how to get same output as topTable but for all the genes ?
limma toptable written 9.6 years ago by Daren Tan160 • updated 11 months ago by Gordon Smyth33k
11
votes
11
answers
4.9k
views
18 follow
11
answers
readCufflinks problem with extdata
cummerbund written 11 months ago by biakemi40 • updated 8 months ago by markus.ball10
14
votes
3
answers
4.9k
views
12 follow
3
answers
New function lfcShrink() in DESeq2
deseq2 written 13 months ago by Michael Love18k
17
votes
4
answers
4.2k
views
10 follow
4
answers
Removing continuous covariate effects in limma analysis
microarray limma written 3.2 years ago by Pauly Lin80 • updated 9 months ago by Gordon Smyth33k
6
votes
2
answers
4.2k
views
8 follow
2
answers
remove microarray batch effects using Limma
microarray written 7.7 years ago by Xie, Zhi NIH/NHLBI [E]60 • updated 8 months ago by Gordon Smyth33k
0
votes
3
answers
4.0k
views
3
answers
XML package cannot be installed
process written 5.9 years ago by Guest User12k • updated 10 weeks ago by nilesh.iiita0
15
votes
0
answers
3.9k
views
10 follow
0
answers
Tutorial: Bioconductor on Coursera
tutorial mooc written 2.8 years ago by Kasper Daniel Hansen6.3k • updated 12 weeks ago by ifmrdatascience0
3
votes
4
answers
3.6k
views
4
answers
Volcano plot labeling troubles
limma volcanoplot written 3.6 years ago by mccallionc4030 • updated 11 months ago by Gordon Smyth33k
3
votes
2
answers
3.5k
views
2
answers
Gene-gene correlation analysis with RNA-seq
edger written 5.0 years ago by Makis Motakis20 • updated 4 months ago by Gordon Smyth33k
4
votes
4
answers
3.5k
views
6 follow
4
answers
3
votes
2
answers
3.1k
views
2
answers
BiocParallel/scater warning after move to R 3.4.0
biocparallel scater written 13 months ago by nhejazi0 • updated 11 months ago by andrew.blake30
18
votes
2
answers
2.9k
views
6 follow
2
answers
0
votes
1
answer
2.7k
views
1
answer
removeBatchEffect options: design and covariates
limma removebatcheffect written 3.9 years ago by Rao,Xiayu530 • updated 9 months ago by Gordon Smyth33k
4
votes
2
answers
2.7k
views
2
answers
DESeq2 Error in varianceStabilizingTransformation
deseq2 written 3.7 years ago by mfarhi10 • updated 8 weeks ago by kasia_piwosz0
9
votes
2
answers
2.7k
views
5 follow
2
answers
What to use: PCA or tSNE dimension reduction in DESeq2 analysis?
rnaseq deseq2 pca tsne written 11 months ago by s.w.vanderlaan20 • updated 11 months ago by Kushal K Dey10
9
votes
2
answers
2.6k
views
6 follow
2
answers
Differential expression analysis starting from TPM data
R tpm written 10 months ago by cahidora20 • updated 10 months ago by Gordon Smyth33k
28
votes
7
answers
2.3k
views
14 follow
7
answers
[FIXED] Error in Gviz (actually, rtracklayer) | IdeogramTrack
rtracklayer gviz written 16 months ago by Ramiro Magno100 • updated 11 months ago by aina.jene10
6
votes
1
answer
2.1k
views
1
answer
0
votes
0
answers
2.1k
views
0
answers
14
votes
6
answers
2.1k
views
10 follow
6
answers
Diffbind: edgeR or DESeq2 ?
edger diffbind deseq2 medip-seq written 2.3 years ago by florian.noack60 • updated 7 months ago by Rory Stark2.5k
4
votes
0
answers
2.0k
views
0
answers
40
votes
3
answers
2.0k
views
3
answers
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