1
vote
3
answers
37
views
3
answers
ATAC-QC shiftGAlignmentsList function
atac-seq atacseqqc written 1 day ago by Shuang He0 • updated 2 hours ago by Julie Zhu4.0k
13
votes
3
answers
1.1k
views
6 follow
3
answers
0
votes
2
answers
48
views
2
answers
0
votes
2
answers
56
views
2
answers
Creating the correct design
deseq2 written 6 days ago by skamboj0 • updated 6 days ago by Michael Love24k
2
votes
2
answers
30
views
2
answers
0
votes
2
answers
26
views
2
answers
4
votes
2
answers
157
views
2
answers
Difference of difference, paired design
limma edger deseq2 written 7 days ago by Bloodgas0 • updated 5 days ago by swbarnes2210
0
votes
2
answers
31
views
2
answers
Comparing two different sequencing method by DEseq2
deseq2 written 12 hours ago by n.naharfancy0 • updated 2 hours ago by swbarnes2210
0
votes
2
answers
80
views
2
answers
0
votes
1
answer
22
views
1
answer
1
vote
1
answer
40
views
1
answer
0
votes
1
answer
113
views
1
answer
ClusterProfiler GSEA with geneList
clusterprofiler gsea genelist written 13 days ago by lucap0 • updated 4 days ago by Ludwig Geistlinger50
1
vote
1
answer
73
views
1
answer
Paired samples in cell lines using DESeq2
deseq2 written 7 days ago by Puks10 • updated 6 days ago by Michael Love24k
2
votes
1
answer
65
views
1
answer
RNA-Seq normalization for co-expression analysis
limma edger wgcna written 3 days ago by Lin40 • updated 2 days ago by Gordon Smyth37k
1
vote
1
answer
44
views
1
answer
Can't run with gff3 file
featurecounts subread gtf/gff/gff3 written 2 days ago by algenubi810 • updated 1 day ago by Gordon Smyth37k
0
votes
1
answer
43
views
1
answer
Retrieving Normalized Groups from Results()
deseq2 written 4 days ago by dennism92510 • updated 3 days ago by Michael Love24k
0
votes
1
answer
47
views
1
answer
Should I subsample an over-clustered sample for DESeq2?
deseq2 written 3 days ago by russell.stewart.j0 • updated 3 days ago by Michael Love24k
0
votes
1
answer
61
views
1
answer
Limma for cell components effect on response
limma minfi 450k epic cell components written 5 days ago by antgomo0 • updated 3 days ago by Aaron Lun24k
2
votes
1
answer
45
views
1
answer
TCGAbiolinks GDCprepare error
error tcgabiolinks gdcprepare written 5 days ago by Talip Zengin10 • updated 5 days ago by tiagochst130
1
vote
1
answer
29
views
1
answer
0
votes
1
answer
58
views
1
answer
Finding genes in a gene set detected by ROAST (or FRY) in limma
limma roast fry written 4 days ago by kentfung0 • updated 4 days ago by Gordon Smyth37k
0
votes
1
answer
64
views
1
answer
deseq2 pre filter rna seq
rnaseq deseq2 written 7 days ago by badribio0 • updated 6 days ago by zefrieira0
0
votes
1
answer
41
views
1
answer
Install a custom CDF file
annotation biobase geoquery rma makecdf written 6 days ago by Seymoo0 • updated 6 days ago by James W. MacDonald50k
2
votes
1
answer
44
views
1
answer
Using altHypothesis with shrunken LFC values in DESeq2
deseq2 written 6 days ago by zefrieira0 • updated 6 days ago by Michael Love24k
0
votes
1
answer
57
views
1
answer
Using GoSemSim with other Ontologies
gosemsim written 6 days ago by helenlong10 • updated 5 days ago by LluĂ­s Revilla Sancho490
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