20
votes
3
answers
10.0k
views
25 follow
3
answers
New function lfcShrink() in DESeq2
deseq2 written 2.5 years ago by Michael Love25k • updated 9 weeks ago by Micheal Stark0
7
votes
1
answer
3.9k
views
14 follow
1
answer
6
votes
1
answer
179
views
8 follow
1
answer
2
votes
1
answer
113
views
6 follow
1
answer
How to get the final value of the after an automatic method in SAM
microarray sam written 4 months ago by xgt198662710 • updated 4 months ago by James W. MacDonald51k
12
votes
2
answers
1.8k
views
9 follow
2
answers
differential expression analysis of htseq data with edgeR/voom
limma edger voom htseq rnaseq123 written 2.4 years ago by wd30 • updated 9 months ago by Gordon Smyth39k
4
votes
1
answer
444
views
1
answer
How to identify real cells in 10X RNA-seq ?
single-cell dropletutils 10x cell calling cellranger written 7 months ago by xingxd160 • updated 7 months ago by Aaron Lun25k
2
votes
0
answers
793
views
0
answers
5
votes
1
answer
104
views
1
answer
3
votes
1
answer
276
views
1
answer
1
vote
0
answers
91
views
0
answers
5
votes
1
answer
354
views
1
answer
6
votes
1
answer
376
views
1
answer
6
votes
2
answers
238
views
6 follow
2
answers
goana and "No annotated genes found in universe" even with Entrez gene ids
edger goana written 12 weeks ago by matrs10 • updated 12 weeks ago by Gordon Smyth39k
7
votes
1
answer
351
views
1
answer
2
votes
1
answer
215
views
1
answer
failing to install the package org.Hs.eg.db in R (version 3.5.2 )
annotationdbi org.hs.eg.db written 7 months ago by biojun0 • updated 7 months ago by Martin Morgan ♦♦ 23k
2
votes
1
answer
289
views
1
answer
Are singscore scores comparable between gene sets?
gsva gsea geneset subtypes singscore written 7 months ago by Pietro20 • updated 7 months ago by Robert Castelo2.3k
5
votes
2
answers
250
views
2
answers
polyFunctions gate in OpenCyto 1.20
opencyto polyfunctions polyfunctionsgate written 5 months ago by k.teijgeler0 • updated 4 months ago by Jiang, Mike1.2k
4
votes
1
answer
136
views
1
answer
3
votes
0
answers
149
views
7 follow
0
answers
Integer overflow issue with ChIPQC
chipqc rstudio written 3 months ago by Nitesh Kumar Singh30 • updated 3 months ago by Martin Morgan ♦♦ 23k
1
vote
1
answer
159
views
1
answer
DEseq2 time-series design
deseq2 written 7 months ago by syednajeebashraf0
5
votes
1
answer
265
views
6 follow
1
answer
correcting the batch effects in Limma and SVA
limma sva combat written 3 months ago by Bogdan580 • updated 3 months ago by Gordon Smyth39k
3
votes
1
answer
238
views
1
answer
1
vote
0
answers
103
views
0
answers
5
votes
2
answers
325
views
6 follow
2
answers
scanBam and countBam end prematurely under Windows 10
rsamtools written 5 weeks ago by Gordon Smyth39k • updated 4 weeks ago by Hervé Pagès ♦♦ 14k
6
votes
2
answers
601
views
5 follow
2
answers
edgeR paired samples with blocking
limma edger paired samples blocking written 11 months ago by anou10 • updated 11 months ago by Gordon Smyth39k
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