0
votes
1
answer
9
views
1
answer
tximport transcript missing
deseq2 salmon tximport written 1 hour ago by mr65188490 • updated 1 hour ago by Michael Love24k
0
votes
0
answers
8
views
0
answers
0
votes
1
answer
13
views
1
answer
Importance of Order in Design Formula
deseq2 written 2 hours ago by dennism92510 • updated 1 hour ago by swbarnes2220
0
votes
0
answers
14
views
0
answers
Unintended grey dot in Gviz plots
gviz written 6 hours ago by Robert0
0
votes
1
answer
23
views
1
answer
DESeq2 nested effect with 5 variables
deseq2 rna-seq written 7 hours ago by sandeep.amberkar180 • updated 1 hour ago by Michael Love24k
1
vote
1
answer
48
views
1
answer
0
votes
0
answers
24
views
0
answers
0
votes
1
answer
35
views
1
answer
DESeq2 analysis for low RNA input
deseq2 written 20 hours ago by capricygcapricyg0 • updated 1 hour ago by Michael Love24k
0
votes
0
answers
16
views
0
answers
3
votes
1
answer
46
views
1
answer
normalization of RNA-seq data after over-expressing the transcription factors
limma edger deseq2 voom written 22 hours ago by Bogdan560 • updated 13 hours ago by Aaron Lun24k
0
votes
0
answers
17
views
0
answers
3
votes
1
answer
31
views
1
answer
TMM Normalization: DESeqDataSet: some values in assay are negative
normalization deseq deseq2 written 23 hours ago by neekonsu0 • updated 23 hours ago by Simon Anders3.6k
2
votes
1
answer
50
views
1
answer
Limma linear fit residual standard deviation calculation
limma written 23 hours ago by krassowski.michal0 • updated 19 hours ago by Gordon Smyth38k
0
votes
1
answer
33
views
1
answer
Incorrect DESeq2 Output
deseq2 written 1 day ago by umajs0 • updated 23 hours ago by Michael Love24k
1
vote
1
answer
34
views
1
answer
0
votes
1
answer
44
views
1
answer
0
votes
1
answer
38
views
1
answer
Contrast vs relevel (DESEq2)
rnaseq deseq2 written 1 day ago by Merlin 10 • updated 1 day ago by Michael Love24k
3
votes
1
answer
53
views
1
answer
Two-way interaction, linear redundancy
limma caret lme4 lmer lm written 1 day ago by Sindre100 • updated 13 hours ago by Aaron Lun24k
2
votes
1
answer
42
views
1
answer
0
votes
1
answer
42
views
1
answer
DESeq2 more than 2 groups comparison
deseq2 written 1 day ago by sstankovic0 • updated 1 day ago by Michael Love24k
0
votes
0
answers
17
views
0
answers
3
votes
1
answer
48
views
1
answer
correcting the batch effects in Limma and SVA
limma sva combat written 1 day ago by Bogdan560 • updated 1 day ago by Gordon Smyth38k
3
votes
1
answer
49
views
1
answer
0
votes
1
answer
47
views
1
answer
deseq2 correction batch effect without design
deseq2 batch effect written 1 day ago by mdidish0 • updated 1 day ago by swbarnes2220
0
votes
1
answer
56
views
1
answer
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