20
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0
answers
6.0k
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23 follow
0
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18
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3
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9.2k
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20 follow
3
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New function lfcShrink() in DESeq2
deseq2 written 2.2 years ago by Michael Love24k
11
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11
answers
6.6k
views
18 follow
11
answers
readCufflinks problem with extdata
cummerbund written 2.0 years ago by biakemi40 • updated 21 months ago by markus.ball10
32
votes
2
answers
35k
views
17 follow
2
answers
conceptual question about FDR, FDR adjusted p-value and q-value
qvalue fdr written 6.6 years ago by Jack Luo400 • updated 2.8 years ago by Gordon Smyth37k
23
votes
4
answers
6.1k
views
15 follow
4
answers
Removing continuous covariate effects in limma analysis
microarray limma written 4.3 years ago by Pauly Lin90 • updated 22 months ago by Gordon Smyth37k
12
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16
answers
9.6k
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15 follow
16
answers
RDAVIDWebService Error 301: Moved Permanently
rdavidwebservice david written 4.0 years ago by Vivek.b100 • updated 11 months ago by gevermalc0
28
votes
7
answers
3.0k
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15 follow
7
answers
[FIXED] Error in Gviz (actually, rtracklayer) | IdeogramTrack
rtracklayer gviz written 2.4 years ago by Ramiro Magno100 • updated 24 months ago by aina.jene10
14
votes
2
answers
6.8k
views
14 follow
2
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remove microarray batch effects using Limma
microarray written 8.7 years ago by Xie, Zhi NIH/NHLBI [E]90 • updated 21 months ago by Gordon Smyth37k
14
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2
answers
6.8k
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14 follow
2
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15
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3
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7.3k
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3
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Nanostring analysis with limma
limma nanostring written 4.2 years ago by mali salmon330 • updated 4.2 years ago by ker6110
7
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1
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3.5k
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14 follow
1
answer
10
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3
answers
6.5k
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13 follow
3
answers
pre-ranked GSEA within R?
written 5.5 years ago by Daniel Schmolze50 • updated 2.9 years ago by assaron150
24
votes
3
answers
14k
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13 follow
3
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Batch correction in DESeq2
rnaseq deseq2 combat removebatcheffect() batch effect written 3.6 years ago by AB70 • updated 3.1 years ago by adam0
14
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5
answers
3.2k
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12 follow
5
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19
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2
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3.9k
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12 follow
2
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biomaRt no longer works with proxy after upgrade
biomart rcurl proxy written 3.7 years ago by enricoferrero570 • updated 3.7 years ago by hygine140
14
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1
answer
651
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12 follow
1
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18
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0
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5.0k
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11 follow
0
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Tutorial: Bioconductor on Coursera
tutorial mooc written 3.9 years ago by Kasper Daniel Hansen6.4k • updated 15 months ago by ifmrdatascience0
16
votes
6
answers
3.1k
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11 follow
6
answers
Diffbind: edgeR or DESeq2 ?
edger diffbind deseq2 medip-seq written 3.3 years ago by florian.noack60 • updated 20 months ago by Rory Stark2.8k
21
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6
answers
8.3k
views
10 follow
6
answers
Problem with biomart's listMarts function
biomart bug written 3.7 years ago by Johannes Rainer1.4k • updated 3.2 years ago by Paul Shannon370
9
votes
1
answer
11k
views
10 follow
1
answer
DESEq2 comparison with mulitple cell types under 2 conditions
deseq2 multiple factor design written 4.2 years ago by kmu00440 • updated 4.2 years ago by Michael Love24k
22
votes
2
answers
12k
views
10 follow
2
answers
Mapping genome regions to gene symbols
gene symbol tcga cnv coordinate written 4.2 years ago by NS50 • updated 4.2 years ago by pshannon80
28
votes
4
answers
3.2k
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10 follow
4
answers
13
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5
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7.8k
views
10 follow
5
answers
RNA-Seq, generate batch-free count matrix
edger sva written 5.0 years ago by Brian Haas90 • updated 4.7 years ago by Gordon Smyth37k
10
votes
2
answers
13k
views
10 follow
2
answers
Differential expression of FPKM from RNA-seq data using limma and voom()
limma written 5.6 years ago by Jon BrĂ¥te160 • updated 3.0 years ago by Gordon Smyth37k
16
votes
2
answers
9.0k
views
9 follow
2
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