20
votes
0
answers
5.5k
views
23 follow
0
answers
11
votes
11
answers
6.3k
views
18 follow
11
answers
readCufflinks problem with extdata
cummerbund written 20 months ago by biakemi40 • updated 17 months ago by markus.ball10
17
votes
3
answers
8.1k
views
18 follow
3
answers
New function lfcShrink() in DESeq2
deseq2 written 22 months ago by Michael Love22k
15
votes
3
answers
6.9k
views
15 follow
3
answers
Nanostring analysis with limma
limma nanostring written 3.9 years ago by mali salmon340 • updated 3.9 years ago by ker6110
31
votes
2
answers
33k
views
15 follow
2
answers
conceptual question about FDR, FDR adjusted p-value and q-value
qvalue fdr written 6.2 years ago by Jack Luo390 • updated 2.5 years ago by Gordon Smyth36k
12
votes
16
answers
9.2k
views
15 follow
16
answers
RDAVIDWebService Error 301: Moved Permanently
rdavidwebservice david written 3.7 years ago by Vivek.b90 • updated 7 months ago by gevermalc0
14
votes
2
answers
6.3k
views
14 follow
2
answers
7
votes
1
answer
2.9k
views
14 follow
1
answer
28
votes
7
answers
2.9k
views
14 follow
7
answers
[FIXED] Error in Gviz (actually, rtracklayer) | IdeogramTrack
rtracklayer gviz written 2.1 years ago by Ramiro Magno100 • updated 20 months ago by aina.jene10
10
votes
3
answers
6.0k
views
13 follow
3
answers
pre-ranked GSEA within R?
written 5.2 years ago by Daniel Schmolze50 • updated 2.6 years ago by assaron150
19
votes
4
answers
5.5k
views
12 follow
4
answers
Removing continuous covariate effects in limma analysis
microarray limma written 4.0 years ago by Pauly Lin80 • updated 18 months ago by Gordon Smyth36k
19
votes
2
answers
3.8k
views
12 follow
2
answers
biomaRt no longer works with proxy after upgrade
biomart rcurl proxy written 3.4 years ago by enricoferrero570 • updated 3.4 years ago by hygine140
17
votes
0
answers
4.8k
views
11 follow
0
answers
Tutorial: Bioconductor on Coursera
tutorial mooc written 3.5 years ago by Kasper Daniel Hansen6.4k • updated 11 months ago by ifmrdatascience0
16
votes
6
answers
2.8k
views
11 follow
6
answers
Diffbind: edgeR or DESeq2 ?
edger diffbind deseq2 medip-seq written 3.0 years ago by florian.noack60 • updated 16 months ago by Rory Stark2.7k
11
votes
2
answers
6.0k
views
11 follow
2
answers
remove microarray batch effects using Limma
microarray written 8.4 years ago by Xie, Zhi NIH/NHLBI [E]80 • updated 17 months ago by Gordon Smyth36k
12
votes
3
answers
12k
views
10 follow
3
answers
Batch correction in DESeq2
rnaseq deseq2 combat removebatcheffect() batch effect written 3.3 years ago by AB30 • updated 2.8 years ago by adam0
21
votes
6
answers
8.0k
views
10 follow
6
answers
Problem with biomart's listMarts function
biomart bug written 3.4 years ago by Johannes Rainer1.4k • updated 2.9 years ago by Paul Shannon370
9
votes
5
answers
2.0k
views
10 follow
5
answers
9
votes
1
answer
9.8k
views
10 follow
1
answer
DESEq2 comparison with mulitple cell types under 2 conditions
deseq2 multiple factor design written 3.9 years ago by kmu00440 • updated 3.9 years ago by Michael Love22k
28
votes
4
answers
2.9k
views
10 follow
4
answers
12
votes
5
answers
7.4k
views
9 follow
5
answers
RNA-Seq, generate batch-free count matrix
edger sva written 4.7 years ago by Brian Haas90 • updated 4.4 years ago by Gordon Smyth36k
10
votes
5
answers
1.9k
views
9 follow
5
answers
arrayQualityMetrics does not complete successfully
arrayqualitymetrics written 3.0 years ago by Jan-Niklas10 • updated 2.3 years ago by fmunoz10
13
votes
2
answers
758
views
9 follow
2
answers
Camera and ROAST
limma written 15 months ago by Nuno Pires20 • updated 15 months ago by Gordon Smyth36k
11
votes
2
answers
3.3k
views
9 follow
2
answers
14
votes
2
answers
4.8k
views
9 follow
2
answers
using duplicateCorrelation with limma+voom for RNA-seq data
limma voom written 4.8 years ago by John Blischak150 • updated 3.8 years ago by Gordon Smyth36k
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