22
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0
answers
6.5k
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25 follow
0
answers
20
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3
answers
10k
views
25 follow
3
answers
New function lfcShrink() in DESeq2
deseq2 written 2.5 years ago by Michael Love26k • updated 3 months ago by Micheal Stark0
42
votes
2
answers
37k
views
21 follow
2
answers
conceptual question about FDR, FDR adjusted p-value and q-value
qvalue fdr written 6.9 years ago by Jack Luo410 • updated 3.1 years ago by Gordon Smyth39k
25
votes
4
answers
6.6k
views
18 follow
4
answers
Removing continuous covariate effects in limma analysis
microarray limma written 4.6 years ago by Pauly Lin110 • updated 2.2 years ago by Gordon Smyth39k
11
votes
11
answers
6.9k
views
18 follow
11
answers
readCufflinks problem with extdata
cummerbund written 2.4 years ago by biakemi40 • updated 2.2 years ago by markus.ball10
28
votes
7
answers
3.2k
views
15 follow
7
answers
[FIXED] Error in Gviz (actually, rtracklayer) | IdeogramTrack
rtracklayer gviz written 2.8 years ago by Ramiro Magno100 • updated 2.3 years ago by aina.jene10
13
votes
16
answers
10k
views
15 follow
16
answers
RDAVIDWebService Error 301: Moved Permanently
rdavidwebservice david written 4.3 years ago by Vivek.b100 • updated 16 months ago by gevermalc0
14
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2
answers
7.2k
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14 follow
2
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7
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1
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4.0k
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14 follow
1
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14
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2
answers
7.3k
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14 follow
2
answers
remove microarray batch effects using Limma
microarray written 9.1 years ago by Xie, Zhi NIH/NHLBI [E]90 • updated 2.1 years ago by Gordon Smyth39k
15
votes
3
answers
7.7k
views
14 follow
3
answers
Nanostring analysis with limma
limma nanostring written 4.6 years ago by mali salmon330 • updated 4.5 years ago by ker6110
16
votes
2
answers
5.9k
views
13 follow
2
answers
using duplicateCorrelation with limma+voom for RNA-seq data
limma voom written 5.5 years ago by John Blischak170 • updated 4.5 years ago by Gordon Smyth39k
24
votes
2
answers
13k
views
13 follow
2
answers
Mapping genome regions to gene symbols
gene symbol tcga cnv coordinate written 4.6 years ago by NS60 • updated 4.5 years ago by pshannon90
10
votes
3
answers
6.9k
views
13 follow
3
answers
pre-ranked GSEA within R?
written 5.8 years ago by Daniel Schmolze50 • updated 3.3 years ago by assaron150
28
votes
3
answers
17k
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13 follow
3
answers
Batch correction in DESeq2
rnaseq deseq2 combat removebatcheffect() batch effect written 3.9 years ago by AB70 • updated 3.5 years ago by adam0
19
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2
answers
4.0k
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12 follow
2
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biomaRt no longer works with proxy after upgrade
biomart rcurl proxy written 4.0 years ago by enricoferrero570 • updated 4.0 years ago by hygine140
14
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5
answers
4.6k
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12 follow
5
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14
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1
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821
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12 follow
1
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19
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2
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3.3k
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11 follow
2
answers
12
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2
answers
14k
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11 follow
2
answers
Differential expression of FPKM from RNA-seq data using limma and voom()
limma written 6.0 years ago by Jon BrĂ¥te160 • updated 3.3 years ago by Gordon Smyth39k
18
votes
0
answers
5.3k
views
11 follow
0
answers
Tutorial: Bioconductor on Coursera
tutorial mooc written 4.2 years ago by Kasper Daniel Hansen6.4k • updated 20 months ago by ifmrdatascience0
16
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6
answers
3.4k
views
11 follow
6
answers
Diffbind: edgeR or DESeq2 ?
edger diffbind deseq2 medip-seq written 3.7 years ago by florian.noack60 • updated 2.1 years ago by Rory Stark2.9k
15
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0
answers
17k
views
11 follow
0
answers
12
votes
1
answer
10k
views
10 follow
1
answer
DESeq2 and shrinkage of log2 fold changes
deseq2 written 3.8 years ago by ribioinfo90 • updated 3.8 years ago by Michael Love26k
21
votes
6
answers
8.6k
views
10 follow
6
answers
Problem with biomart's listMarts function
biomart bug written 4.0 years ago by Johannes Rainer1.5k • updated 3.6 years ago by Paul Shannon370
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