19
votes
0
answers
5.3k
views
21 follow
0
answers
11
votes
11
answers
6.1k
views
18 follow
11
answers
readCufflinks problem with extdata
cummerbund written 19 months ago by biakemi40 • updated 16 months ago by markus.ball10
17
votes
3
answers
7.5k
views
18 follow
3
answers
New function lfcShrink() in DESeq2
deseq2 written 20 months ago by Michael Love21k
31
votes
2
answers
31k
views
15 follow
2
answers
conceptual question about FDR, FDR adjusted p-value and q-value
qvalue fdr written 6.1 years ago by Jack Luo390 • updated 2.3 years ago by Gordon Smyth36k
7
votes
1
answer
2.6k
views
14 follow
1
answer
28
votes
7
answers
2.8k
views
14 follow
7
answers
[FIXED] Error in Gviz (actually, rtracklayer) | IdeogramTrack
rtracklayer gviz written 23 months ago by Ramiro Magno100 • updated 18 months ago by aina.jene10
12
votes
16
answers
8.9k
views
14 follow
16
answers
RDAVIDWebService Error 301: Moved Permanently
rdavidwebservice david written 3.5 years ago by Vivek.b90 • updated 6 months ago by gevermalc0
14
votes
3
answers
6.7k
views
13 follow
3
answers
Nanostring analysis with limma
limma nanostring written 3.7 years ago by mali salmon330 • updated 3.7 years ago by ker6110
10
votes
3
answers
5.8k
views
13 follow
3
answers
pre-ranked GSEA within R?
written 5.0 years ago by Daniel Schmolze50 • updated 2.4 years ago by assaron150
19
votes
4
answers
5.2k
views
12 follow
4
answers
Removing continuous covariate effects in limma analysis
microarray limma written 3.8 years ago by Pauly Lin80 • updated 16 months ago by Gordon Smyth36k
19
votes
2
answers
3.8k
views
12 follow
2
answers
biomaRt no longer works with proxy after upgrade
biomart rcurl proxy written 3.2 years ago by enricoferrero570 • updated 3.2 years ago by hygine140
11
votes
2
answers
5.6k
views
11 follow
2
answers
remove microarray batch effects using Limma
microarray written 8.2 years ago by Xie, Zhi NIH/NHLBI [E]80 • updated 15 months ago by Gordon Smyth36k
11
votes
2
answers
6.1k
views
11 follow
2
answers
17
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0
answers
4.6k
views
11 follow
0
answers
Tutorial: Bioconductor on Coursera
tutorial mooc written 3.4 years ago by Kasper Daniel Hansen6.4k • updated 10 months ago by ifmrdatascience0
14
votes
6
answers
2.7k
views
10 follow
6
answers
Diffbind: edgeR or DESeq2 ?
edger diffbind deseq2 medip-seq written 2.8 years ago by florian.noack60 • updated 14 months ago by Rory Stark2.7k
21
votes
6
answers
7.9k
views
10 follow
6
answers
Problem with biomart's listMarts function
biomart bug written 3.2 years ago by Johannes Rainer1.3k • updated 2.7 years ago by Paul Shannon370
9
votes
1
answer
9.1k
views
10 follow
1
answer
DESEq2 comparison with mulitple cell types under 2 conditions
deseq2 multiple factor design written 3.7 years ago by kmu00440 • updated 3.7 years ago by Michael Love21k
28
votes
4
answers
2.7k
views
10 follow
4
answers
24
votes
3
answers
3.0k
views
9 follow
3
answers
12
votes
3
answers
11k
views
9 follow
3
answers
Batch correction in DESeq2
rnaseq deseq2 combat removebatcheffect() batch effect written 3.1 years ago by AB30 • updated 2.6 years ago by adam0
12
votes
5
answers
7.1k
views
9 follow
5
answers
RNA-Seq, generate batch-free count matrix
edger sva written 4.5 years ago by Brian Haas90 • updated 4.3 years ago by Gordon Smyth36k
13
votes
2
answers
672
views
9 follow
2
answers
Camera and ROAST
limma written 13 months ago by Nuno Pires20 • updated 13 months ago by Gordon Smyth36k
11
votes
2
answers
3.2k
views
9 follow
2
answers
10
votes
5
answers
1.9k
views
9 follow
5
answers
arrayQualityMetrics does not complete successfully
arrayqualitymetrics written 2.9 years ago by Jan-Niklas10 • updated 2.2 years ago by fmunoz10
14
votes
2
answers
4.6k
views
9 follow
2
answers
using duplicateCorrelation with limma+voom for RNA-seq data
limma voom written 4.7 years ago by John Blischak150 • updated 3.7 years ago by Gordon Smyth36k
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