19
votes
3
answers
9.5k
views
23 follow
3
answers
New function lfcShrink() in DESeq2
deseq2 written 2.3 years ago by Michael Love24k • updated 7 days ago by Micheal Stark0
12
votes
2
answers
2.0k
views
6 follow
2
answers
Plot ggplot2 and ggbio Images Together
ggbio ggplot2 cowplot written 4.2 years ago by andrew.j.skelton73320 • updated 23 days ago by Assa Yeroslaviz1.4k
6
votes
2
answers
75
views
2
answers
the coordinates of exons of RefSeq or ENSEMBL genes
txdb exons genome written 19 days ago by Bogdan570 • updated 19 days ago by Martin Morgan ♦♦ 23k
0
votes
3
answers
195
views
3
answers
DEXSeq - counts from paired reads and unpaired singletons
dexseq written 4 months ago by maslane0 • updated 25 days ago by pakistanidresses010
7
votes
2
answers
60
views
2
answers
Limma residuals matrix
limma written 4 days ago by agustin.gonvi10 • updated 4 days ago by Gordon Smyth38k
1
vote
1
answer
149
views
1
answer
0
votes
0
answers
117
views
0
answers
5
votes
1
answer
147
views
1
answer
RNA-seq normalization without filtering
rnaseq normalization edger deseq2 written 11 days ago by Lin40 • updated 11 days ago by Steve Lianoglou12k
5
votes
3
answers
3.3k
views
3
answers
How to remove out of bound rows from granges
granges grangeslist written 3.8 years ago by vinod.acear40 • updated 24 days ago by balwierz40
1
vote
0
answers
50
views
0
answers
0
votes
0
answers
76
views
0
answers
R Version 3.6.1
software error tutorial written 10 days ago by naeemurself0 • updated 10 days ago by Laurent Gatto1.2k
0
votes
0
answers
67
views
0
answers
0
votes
1
answer
63
views
1
answer
Problem in featureCounts file.
featurecounts rna-seq subread written 21 days ago by hafiz.talhamalik0 • updated 20 days ago by Wei Shi3.1k
0
votes
1
answer
105
views
1
answer
0
votes
1
answer
288
views
1
answer
0
votes
0
answers
48
views
0
answers
1
vote
1
answer
99
views
1
answer
0
votes
2
answers
88
views
2
answers
Two controls in RNAseq formula for DESeq2
deseq2 design formula controls written 8 days ago by taveluz0 • updated 7 days ago by Michael Love24k
2
votes
1
answer
105
views
1
answer
What can I do if I only have TPM but not raw counts data?
deseq2 written 28 days ago by Di Yang0 • updated 28 days ago by Steve Lianoglou12k
1
vote
1
answer
58
views
1
answer
Is the colnames of model.matrix on the page 34 in edgeR User's Guide?
edger written 8 days ago by 2002ymx020 • updated 8 days ago by Gordon Smyth38k
0
votes
1
answer
65
views
1
answer
cnetplot graph independently.
annotation go written 28 days ago by MperezM0 • updated 26 days ago by jmoon11940
2
votes
1
answer
76
views
1
answer
0
votes
1
answer
91
views
1
answer
EdgeR mistake- dispersion
edger written 18 days ago by trumbia0 • updated 17 days ago by Gordon Smyth38k
3
votes
1
answer
91
views
1
answer
0
votes
0
answers
86
views
0
answers
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