Search
1
vote
1
answer
218
views
1
answer
Rsamtools isSupplementary argument not working
rsamtools scanbamparam countbam issupplementary scanbamflag written 11 months ago by galeoni • 0 • updated 11 months ago by Martin Morgan ♦♦ 23k
0
votes
1
answer
291
views
1
answer
Error installing WGCNA for R 3.6 in RStudio Version 1.2.1335
wgcna installation error compilation written 3 months ago by rm1238 • 0 • updated 3 months ago by Peter Langfelder • 2.2k
4
votes
1
answer
238
views
1
answer
arrayQualityMetrics in reading HTAfeatureSet read by oligo package
microarray arrayqualitymetrics hta2.0 written 9 months ago by RV • 10 • updated 9 months ago by Mike Smith • 3.9k
0
votes
2
answers
293
views
2
answers
Data normalization and transformation using DESeq2
rnaseq normalization deseq2 variancestabilizingtransformation rlog transformation written 9 months ago by chiara.facciotto • 0
0
votes
1
answer
129
views
1
answer
project miran packages
mirna30cdf packages written 6 months ago by cpyadav22 • 0 • updated 6 months ago by Guido Hooiveld • 2.5k
2
votes
1
answer
91
views
1
answer
How to make a GPos subclass that accept both UnstitchedGPos and StitchedGPos inputs?
genomicranges written 9 weeks ago by Charles Plessy • 110 • updated 6 weeks ago by Hervé Pagès ♦♦ 14k
7
votes
1
answer
179
views
1
answer
RNA-seq normalization without filtering
rnaseq normalization edger deseq2 written 5 weeks ago by Lin • 50 • updated 5 weeks ago by Steve Lianoglou ♦ 12k
0
votes
0
answers
161
views
0
answers
I am trying to recreate results from an Alzheimer's paper but I can't figure out my linear regression model
microarray limma edger differential gene expression linear regression written 6 months ago by ravelarvargas • 0
0
votes
0
answers
196
views
0
answers
Query based on PMIDs
geoquery sradb written 9 months ago by Deepak Tanwar • 10
2
votes
1
answer
275
views
1
answer
edgeR. Known cancer genes are not differentially expressed?
edger tcga written 9 months ago by rina • 0 • updated 9 months ago by Aaron Lun • 24k
0
votes
0
answers
56
views
0
answers
(Closed) How to extract top 5% number infomation from matrix by using R?
R written 22 days ago by yangxiujujuju • 0 • updated 22 days ago by James W. MacDonald ♦ 51k
0
votes
0
answers
74
views
0
answers
How to center data points on coordinates (bases) in Gviz?
gviz written 8 weeks ago by Robert • 10
0
votes
1
answer
74
views
1
answer
Subset-ing Large DESeqDataSet for data extraction with contrast function
deseq2 written 9 days ago by l.s.wijaya • 0 • updated 9 days ago by Michael Love ♦ 25k
0
votes
1
answer
210
views
1
answer
Interpretation of logFC and pvalues: LRT vs Wald tests in DESeq2
deseq2 written 8 months ago by RS1 • 0 • updated 8 months ago by Michael Love ♦ 25k
0
votes
0
answers
91
views
0
answers
Same results with static and time course analysis respectively in EDGE
edge written 3 months ago by xgt1986627 • 10
0
votes
1
answer
164
views
1
answer
DESeq2 overestimates log2Fold Change
deseq2 written 7 months ago by marcomhefti • 0 • updated 7 months ago by James W. MacDonald ♦ 51k
3
votes
1
answer
536
views
1
answer
converting a fasta file to .2bit format
biostrings rtracklayer written 11 months ago by saripalligautam86 • 10 • updated 11 months ago by Hervé Pagès ♦♦ 14k
0
votes
1
answer
138
views
1
answer
DESeq2 Parallel Computing Stall on Server
deseq2 written 8 months ago by coyoung • 0 • updated 8 months ago by Michael Love ♦ 25k
1
vote
1
answer
105
views
1
answer
Use intercept or not in model matrix for edgeR methylation analysis
edger methylation R glm written 24 days ago by sabrina.mcnew • 0
0
votes
0
answers
115
views
0
answers
search @ support.bioconductor.org does not work on post titles. (Try e.g. searching ronaldfisher to find this very post back)
bioconductor website support written 4 months ago by Philip Lijnzaad • 160
2
votes
1
answer
124
views
1
answer
"Packages required but not available." rtracklayer in OSX is not available to CRAN, resulting in errors for downstream dependencies.
variantannotation rtracklayer genomicranges s4vectors summarizedexperiment written 8 weeks ago by james.dalgleish • 30 • updated 8 weeks ago by Steve Lianoglou ♦ 12k
0
votes
0
answers
60
views
0
answers
Analyze ct data using HTqPCR
htqpcr normqpcr R written 10 weeks ago by annesha • 0
0
votes
1
answer
157
views
1
answer
DESeq help for comparing contrasts
deseq2 written 5 months ago by muc345 • 0 • updated 5 months ago by Michael Love ♦ 25k
0
votes
1
answer
82
views
1
answer
Obtaining recount project data in TPM?
recount written 21 days ago by codden.c • 0 • updated 16 days ago by Leonardo Collado Torres • 660
0
votes
1
answer
121
views
1
answer
Problem in installing
deseq2 software error written 6 months ago by jivarajivaraj • 10 • updated 6 months ago by Martin Morgan ♦♦ 23k
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