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votes
1
answer
474
views
1
answer
0
votes
2
answers
1.1k
views
2
answers
Conversion from counts to FPKM
normalization deseq2 counts fpkm fpkm() written 12 months ago by chiara.facciotto0 • updated 8 months ago by Ahmed Alhendi0
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0
answers
73
views
0
answers
0
votes
0
answers
260
views
0
answers
0
votes
1
answer
159
views
1
answer
project miran packages
mirna30cdf packages written 9 months ago by cpyadav220 • updated 9 months ago by Guido Hooiveld2.5k
0
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0
answers
207
views
0
answers
0
votes
1
answer
38
views
1
answer
Install Bioconductor in R studio
R written 3 days ago by zeina.bourhane0 • updated 2 days ago by Kevin Blighe390
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0
answers
112
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0
answers
2
votes
2
answers
64
views
2
answers
1
vote
1
answer
474
views
1
answer
DiffBind for ATAC-seq -- bFullLibrarySize parameter
diffbind atac written 9 months ago by paz20050 • updated 9 months ago by Rory Stark3.0k
0
votes
1
answer
253
views
1
answer
Interpretation of logFC and pvalues: LRT vs Wald tests in DESeq2
deseq2 written 11 months ago by RS10 • updated 11 months ago by Michael Love26k
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votes
0
answers
119
views
0
answers
0
votes
1
answer
190
views
1
answer
DESeq2 overestimates log2Fold Change
deseq2 written 10 months ago by marcomhefti0 • updated 10 months ago by James W. MacDonald52k
2
votes
1
answer
310
views
1
answer
edgeR and batch effect correction for differential analysis
rnaseq batcheffect limma edger R written 7 months ago by madhu930 • updated 7 months ago by James W. MacDonald52k
0
votes
2
answers
1.5k
views
2
answers
CRISPRseek question on scoring
crisprseek written 5.3 years ago by Julie Zhu4.1k
1
vote
1
answer
259
views
1
answer
Why the p value and logFC calculated by limma is so small
limma volcanoplot logfc pvalue written 9 months ago by xingxd160 • updated 9 months ago by Gordon Smyth39k
0
votes
1
answer
81
views
1
answer
Shrinkage and gene ranking
deseq2 written 6 months ago by haasroni0 • updated 6 months ago by Michael Love26k
0
votes
1
answer
64
views
1
answer
DESeq2 DE analysis of two samples conditioned on a shared reference
deseq2 written 8 days ago by amin.zzia0 • updated 8 days ago by Michael Love26k
0
votes
2
answers
1.4k
views
2
answers
how to handle missing data for SampleTable in DESeq2
deseq2 sample_table missing data written 4.7 years ago by anpham0 • updated 10 months ago by g.wang20
0
votes
1
answer
233
views
1
answer
AH134 and other AnnotationHub objects unavailable as "defunct"
annotationhub written 7 months ago by Robert K. Bradley40 • updated 7 months ago by shepherl ♦♦ 1.7k
0
votes
1
answer
124
views
1
answer
Obtaining recount project data in TPM?
recount written 3 months ago by codden.c0 • updated 3 months ago by Leonardo Collado Torres710
2
votes
1
answer
181
views
1
answer
xcms centwave roiList error
xcms centwave roilist xic written 4 months ago by roxana10 • updated 4 months ago by Johannes Rainer1.5k
0
votes
0
answers
132
views
0
answers
0
votes
0
answers
73
views
0
answers
0
votes
1
answer
153
views
1
answer
Problem in installing
deseq2 software error written 8 months ago by Fereshteh20 • updated 8 months ago by Martin Morgan ♦♦ 24k
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