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0
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1
answer
474
views
1
answer
Error installing WGCNA for R 3.6 in RStudio Version 1.2.1335
wgcna installation error compilation written 6 months ago by rm1238 • 0 • updated 6 months ago by Peter Langfelder • 2.3k
0
votes
2
answers
1.1k
views
2
answers
Conversion from counts to FPKM
normalization deseq2 counts fpkm fpkm() written 12 months ago by chiara.facciotto • 0 • updated 8 months ago by Ahmed Alhendi • 0
0
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0
answers
73
views
0
answers
RnBeads set ghost script environment variable
rnbeads ghostscript written 6 weeks ago by Kathrin.Klee • 0
0
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0
answers
260
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0
answers
Calculating short read coverage at genome wide windows for create.set- MEDIPS
createset medip-seq written 12 months ago by oussama.badad • 0 • updated 11 months ago by Bioconductor Community ♦♦ 0
0
votes
1
answer
159
views
1
answer
project miran packages
mirna30cdf packages written 9 months ago by cpyadav22 • 0 • updated 9 months ago by Guido Hooiveld • 2.5k
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0
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207
views
0
answers
I am trying to recreate results from an Alzheimer's paper but I can't figure out my linear regression model
microarray limma edger differential gene expression linear regression written 9 months ago by ravelarvargas • 0
0
votes
1
answer
38
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1
answer
Install Bioconductor in R studio
R written 3 days ago by zeina.bourhane • 0 • updated 2 days ago by Kevin Blighe • 390
0
votes
0
answers
112
views
0
answers
How to center data points on coordinates (bases) in Gviz?
gviz written 4 months ago by Robert • 10
2
votes
2
answers
64
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2
answers
Can't find library BSgenome.Mmulatta.UCSC for latest genome (mmul10)
annotation bsgenome mmul10 written 8 days ago by P Darakjian • 40 • updated 7 days ago by Hervé Pagès ♦♦ 14k
1
vote
1
answer
474
views
1
answer
DiffBind for ATAC-seq -- bFullLibrarySize parameter
diffbind atac written 9 months ago by paz2005 • 0 • updated 9 months ago by Rory Stark • 3.0k
0
votes
1
answer
253
views
1
answer
Interpretation of logFC and pvalues: LRT vs Wald tests in DESeq2
deseq2 written 11 months ago by RS1 • 0 • updated 11 months ago by Michael Love ♦ 26k
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votes
0
answers
119
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0
answers
Same results with static and time course analysis respectively in EDGE
edge written 6 months ago by xgt1986627 • 10
0
votes
1
answer
190
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1
answer
DESeq2 overestimates log2Fold Change
deseq2 written 10 months ago by marcomhefti • 0 • updated 10 months ago by James W. MacDonald ♦ 52k
2
votes
1
answer
310
views
1
answer
edgeR and batch effect correction for differential analysis
rnaseq batcheffect limma edger R written 7 months ago by madhu93 • 0 • updated 7 months ago by James W. MacDonald ♦ 52k
0
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2
answers
1.5k
views
2
answers
CRISPRseek question on scoring
crisprseek written 5.3 years ago by Julie Zhu • 4.1k
1
vote
1
answer
259
views
1
answer
Why the p value and logFC calculated by limma is so small
limma volcanoplot logfc pvalue written 9 months ago by xingxd16 • 0 • updated 9 months ago by Gordon Smyth ♦ 39k
0
votes
1
answer
81
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1
answer
Shrinkage and gene ranking
deseq2 written 6 months ago by haasroni • 0 • updated 6 months ago by Michael Love ♦ 26k
0
votes
1
answer
64
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1
answer
DESeq2 DE analysis of two samples conditioned on a shared reference
deseq2 written 8 days ago by amin.zzia • 0 • updated 8 days ago by Michael Love ♦ 26k
0
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2
answers
1.4k
views
2
answers
how to handle missing data for SampleTable in DESeq2
deseq2 sample_table missing data written 4.7 years ago by anpham • 0 • updated 10 months ago by g.wang2 • 0
0
votes
1
answer
233
views
1
answer
AH134 and other AnnotationHub objects unavailable as "defunct"
annotationhub written 7 months ago by Robert K. Bradley • 40 • updated 7 months ago by shepherl ♦♦ 1.7k
0
votes
1
answer
124
views
1
answer
Obtaining recount project data in TPM?
recount written 3 months ago by codden.c • 0 • updated 3 months ago by Leonardo Collado Torres • 710
2
votes
1
answer
181
views
1
answer
xcms centwave roiList error
xcms centwave roilist xic written 4 months ago by roxana • 10 • updated 4 months ago by Johannes Rainer • 1.5k
0
votes
0
answers
132
views
0
answers
Error while creating txDb from gtf file
genomicfeatures written 3 months ago by bioinagesh • 0
0
votes
0
answers
73
views
0
answers
Help with Affymetrix Human Genome U95A 2.0
microarray written 10 weeks ago by pablo.giraudi • 0
0
votes
1
answer
153
views
1
answer
Problem in installing
deseq2 software error written 8 months ago by Fereshteh • 20 • updated 8 months ago by Martin Morgan ♦♦ 24k
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