40
votes
2
answers
36k
views
21 follow
2
answers
conceptual question about FDR, FDR adjusted p-value and q-value
qvalue fdr written 6.8 years ago by Jack Luo410 • updated 3.0 years ago by Gordon Smyth38k
7
votes
2
answers
32k
views
7 follow
2
answers
[DESEQ2] How to access the normalized data of a DESeqDataSet
deseq2 written 4.6 years ago by john60 • updated 4.6 years ago by Steve Lianoglou12k
0
votes
4
answers
29k
views
4
answers
how to set R memory limit
written 7.8 years ago by wang peter2.0k • updated 7.8 years ago by Sunny Yu Liu80
1
vote
2
answers
29k
views
2
answers
error in hclust function
written 7.4 years ago by Alyaa Mahmoud440 • updated 7.4 years ago by Thomas Girke1.7k
8
votes
1
answer
27k
views
8 follow
1
answer
DESeq2 output explanation
deseq deseq2 written 4.9 years ago by francesca.defilippis60 • updated 4.9 years ago by Michael Love25k
0
votes
1
answer
25k
views
1
answer
no method for coercing S4 class to a vector
written 5.1 years ago by Guest User12k • updated 5.1 years ago by Andrzej Oleś720
14
votes
2
answers
24k
views
10 follow
2
answers
heatmap.2() get matrix after hierarchical clustering
clustering written 7.0 years ago by Guest User12k • updated 7.0 years ago by Thomas Girke1.7k
0
votes
0
answers
22k
views
0
answers
2
votes
1
answer
21k
views
1
answer
Row labels in a heatmap
microarray written 7.3 years ago by Liat Shavit Grievink60 • updated 7.3 years ago by James W. MacDonald51k
0
votes
1
answer
20k
views
1
answer
Error in plot.window(...) : need finite 'xlim' values
written 10.9 years ago by T Joshi90 • updated 10.9 years ago by Sean Davis21k
0
votes
1
answer
19k
views
1
answer
Upgrading Bioconductor using BiocUpgrade
biocinstaller written 7.0 years ago by Lavinia Gordon480 • updated 7.0 years ago by Dan Tenenbaum8.2k
13
votes
1
answer
19k
views
1
answer
RPKM, CPM and TMM
rnaseq edger differential expression written 4.3 years ago by Pauly Lin110 • updated 4.3 years ago by Aaron Lun25k
2
votes
1
answer
19k
views
1
answer
5
votes
3
answers
18k
views
3
answers
BLAST in R
written 8.4 years ago by Zoha Moztarzadeh20 • updated 3.8 years ago by mhahsler20
15
votes
0
answers
16k
views
11 follow
0
answers
15
votes
2
answers
16k
views
9 follow
2
answers
deseq2 filter the low counts
deseq2 lowcount written 4.6 years ago by aristotele_m30 • updated 3.1 years ago by pkachroo10
28
votes
3
answers
16k
views
13 follow
3
answers
Batch correction in DESeq2
rnaseq deseq2 combat removebatcheffect() batch effect written 3.8 years ago by AB70 • updated 3.4 years ago by adam0
8
votes
1
answer
16k
views
1
answer
DESeq2 baseMean counts
deseq2 written 3.9 years ago by zpingfeng0 • updated 3.9 years ago by Michael Love25k
10
votes
2
answers
15k
views
2
answers
FDR and padj in deseq and edger
edger deseq2 written 4.0 years ago by tonja.r40 • updated 4.0 years ago by Gordon Smyth38k
0
votes
4
answers
14k
views
4
answers
installation packages
written 6.1 years ago by fran vino40 • updated 6.1 years ago by Steve Lianoglou12k
0
votes
1
answer
14k
views
1
answer
Unable to find an inherited method for function ‘exprs’
biobase geoquery virtualarray written 6.2 years ago by Dave Tang210 • updated 6.2 years ago by Wolfgang Huber13k
1
vote
1
answer
14k
views
1
answer
reading fasta file into R
biostrings written 7.2 years ago by Guest User12k • updated 7.2 years ago by Vincent J. Carey, Jr.6.3k
12
votes
2
answers
14k
views
11 follow
2
answers
Differential expression of FPKM from RNA-seq data using limma and voom()
limma written 5.9 years ago by Jon Bråte160 • updated 3.2 years ago by Gordon Smyth38k
2
votes
1
answer
14k
views
1
answer
Normalization in DESeq2
deseq deseq2 written 4.8 years ago by solgakar@bi.technion.ac.il60 • updated 4.8 years ago by Michael Love25k
5
votes
2
answers
13k
views
2
answers
Group comparison in DESeq2
deseq2 results written 4.2 years ago by jjinhyoungkim20 • updated 4.2 years ago by Michael Love25k
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