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News:
SBGNview: Data Analysis, Integration and Visualization on 5000+ Pathways/3000+ Species
SBGN
SBGNview
pathways
pathview
visualization
3 hours ago
Luo Weijun
♦ 1.5k
0
votes
1
reply
26
views
Diffbind error while running example data
DiffBind
9 hours ago
Lucky
• 0
• updated 7 hours ago
Rory Stark
♦ 3.6k
1
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3
replies
70
views
Best way to handle tags of bam files
GenomicAlignments
bam
Rsamtools
1 day ago • updated 7 hours ago
changxu.fan
• 0
0
votes
8
replies
50
views
problem installing ENmix package
ENmix
Bioconductor
rtracklayer
9 hours ago
lea
• 0
• updated 1 hour ago
James W. MacDonald
56k
0
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0
replies
19
views
How to get illumina CpG IDs by gene name?
MethylationArrayData
RnBeads
10 hours ago
D
• 0
0
votes
1
reply
42
views
Can you colour dendrogram branch clusters in pheatmap?
R
heatmaps
pheatmap
1 day ago
trichorico
• 10
• updated 11 hours ago
Kevin Blighe
2.5k
2
votes
1
reply
36
views
Splitting multiple groups - three different ages
DESeq2
1 day ago
jd348
• 0
• updated 11 hours ago
Michael Love
32k
0
votes
1
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43
views
Same methylation probe ID with different locus annotations in Illumina 27k and 450k plotforms
IlluminaHumanMethylation27kanno.ilmn12.hg19
1 day ago
yuabrahamliu
• 0
• updated 11 hours ago
Kevin Blighe
2.5k
0
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1
reply
29
views
DESeq2, tximport normalization, normalization factors, size factors
tximport
DESeq2
normalizationfactors
sizefactors
13 hours ago
svenbioinf
• 0
• updated 12 hours ago
Michael Love
32k
2
votes
4
replies
61
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Removing rows (countData) from a DESeq Object
DESeq2
14 hours ago • updated 13 hours ago
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• 0
3
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1
reply
44
views
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1 day ago
jd348
• 0
• updated 1 day ago
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32k
1
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2
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54
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DESeq2
1 day ago
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• updated 1 day ago
ATpoint
• 470
0
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1
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53
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DMRcate
1 day ago
macsue.jacques
• 10
• updated 1 day ago
shepherl
2.5k
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1
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42
views
Deseq2 Paired Samples Design
DESeq2
2 days ago
Rita
• 0
• updated 1 day ago
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32k
0
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2
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81
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edgeR
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3 days ago
robert.chen
• 0
• updated 2 days ago
Gordon Smyth
42k
0
votes
1
reply
46
views
Produce quantile normalized expression values for use with BatchQC
BatchQC
2 days ago
Josh
• 0
• updated 2 days ago
Malcolm Cook
♦ 1.5k
0
votes
0
replies
33
views
tximport rowsum error
tximport
2 days ago
Ezgi
• 30
1
vote
1
reply
43
views
PCA rand heatmap of raw data
DESeq2
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2 days ago
Fischer-philipp
• 30
• updated 2 days ago
Michael Love
32k
2
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3
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57
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Single sided P-value for DESeq2 Likelihood Ratio Test
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2 days ago
glennli
• 0
• updated 2 days ago
Michael Love
32k
1
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1
reply
54
views
DiffBind fragmentSize meaning
DiffBind
10 days ago
Jürgen
• 0
• updated 2 days ago
Rory Stark
♦ 3.6k
0
votes
4
replies
83
views
DiffBind analysis for ATAC-Seq error Error processing one or more read files
ATACSeq
DiffBind
7 days ago
Asma
• 0
• updated 2 days ago
Rory Stark
♦ 3.6k
0
votes
1
reply
49
views
ERROR: cannot finish the BAM file. Please check the disk space in the output directory.
Rsubread
2 days ago
Mehrad
• 0
• updated 2 days ago
Yang Liao
• 220
0
votes
3
replies
89
views
How to properly average normalized counts of biological replicates
DESeq2
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RNASeqR
4 days ago
Marina
• 0
• updated 1 day ago
Michael Love
32k
4
votes
5
replies
100
views
DEseq2 results
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2 days ago
MOHAMMAD
• 0
• updated 1 day ago
Kevin Blighe
2.5k
0
votes
1
reply
48
views
How to plot the RMA log2 normalised data from Affymetrix
log2
RMA
Affymetrix
affy
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4 days ago
Lara
• 0
• updated 3 days ago
Kevin Blighe
2.5k
0
votes
0
replies
36
views
ribosomeProfilingQC - countReads function - is it possible to consider library type - non-stranded, forward-stranded or rev-stransded?
ribosomeProfilingQC
countReads
3 days ago
alexandr.gopanenko
• 20
0
votes
2
replies
59
views
Error: Aesthetics must be either length 1 or the same as the data (1): x and xend
fgsea
3 days ago
yueli7
• 10
• updated 3 days ago
Kevin Blighe
2.5k
0
votes
2
replies
51
views
Error in library(oligo) : package or namespace load failed for ‘oligoClasses’
R
oligoClasses
Oligoclass
Bioconductor
Oligo
4 days ago
tanya
• 0
• updated 4 days ago
Martin Morgan
25k
0
votes
3
replies
114
views
Unable to upload an App in shinyapps.io with bioconductor packages
shinny
graph
RBGL
13 days ago
Xavier-Andoni
• 0
• updated 5 days ago
Marcel Ramos
490
1
vote
2
replies
79
views
Question about nearest function in R package IRanges
nearest
IRanges
5 days ago
junhui.li11
• 0
• updated 3 days ago
Julie Zhu
♦ 4.3k
1
vote
2
replies
61
views
How to install Ghostscript in windows?
RnBeads.hg19
RnBeads
5 days ago
Federica
• 0
0
votes
5
replies
1.0k
views
assayData: 0 features
geoquery
5.5 years ago
Ed Siefker
• 230
• updated 5 days ago
H. Zadeh
• 0
0
votes
2
replies
61
views
Pair-wise DESeq2 using tximport (running time and multi-threading)
tximport
DESeq2
5 days ago
Marcus
• 0
• updated 5 days ago
Michael Love
32k
0
votes
1
reply
53
views
Trouble Loading Data into Champ
loaddata
ChAMPdata
champload
R
ChAMP
8 days ago
Bethan
• 0
• updated 5 days ago
bastien.ducreux
• 0
3
votes
6
replies
182
views
Is it possible to create `HDF5Array` Delayed Arrays from HDF5 files hosted on S3?
TileDBArray
HDF5Array
MultiAssayExperiment
10 days ago • updated 4 days ago
Thomas Sandmann
• 80
1
vote
2
replies
59
views
error in DESeq2 results(dds)
DESeq2
datasetfrommatrix
results
error
5 days ago
james
• 0
0
votes
0
replies
32
views
dmrseq on a subset of genomic regions
dmrseq
6 days ago
KIR_F
• 0
0
votes
1
reply
68
views
plotSex error message
minfiData
plotsex
minfi
minfiDataEPIC
r
6 days ago
Bethan
• 0
• updated 5 days ago
suman
• 0
0
votes
0
replies
28
views
iupac2meme function missing in universalmotif package
universalmotif
6 days ago
lessismore
• 0
0
votes
0
replies
25
views
combineTwoExpressionSet from a4Base is not working properly
a4Base
6 days ago
irene.roman
• 0
0
votes
0
replies
42
views
MEDIPS - export wig with normalized counts
MEDIPS
7 days ago • updated 6 days ago
lshepard
• 40
2
votes
2
replies
64
views
makeTxDbFromUCSC("mm10", "refGene") gives "not supported" error
GenomicF
GenomicFeatures
7 days ago • updated 6 days ago
erhoppe
• 0
2
votes
4
replies
79
views
How to launch the RnBeads Data Juggler?
RnBeads
7 days ago
Federica
• 0
1
vote
4
replies
73
views
goseq package loading issues
DESeq2
goseq
7 days ago • updated 6 days ago
avinashi
• 0
1
vote
1
reply
52
views
How to find the source code of the package STRINGdb ?
STRINGdb
Bioconductor
7 days ago
deepue
• 10
• updated 7 days ago
shepherl
2.5k
1
vote
2
replies
88
views
Regarding transcripts to gene ID conversion in tximport
salmon
tximport
DESeq2
7 days ago • updated 6 days ago
Nikolay Ivanov
• 0
0
votes
1
reply
54
views
error during installation of 'DEseq2' package
DESeq2
Install
7 days ago
su
• 0
• updated 1 day ago
Hervé Pagès
14k
3
votes
2
replies
91
views
Why some statistically differently expressed genes are not DEGs?
RNASeqData
DEGreport
edgeR
7 days ago
Wuschel
• 10
2
votes
2
replies
70
views
How to download KEGG pathways for list of enriched genes
RNASeqRData
GO
7 days ago
Wuschel
• 10
2
votes
3
replies
83
views
DESeq2 extracting relevant contrasts with interactions
DESeq2
DifferentialExpression
8 days ago
jd348
• 0
• updated 7 days ago
Michael Love
32k
40,286 results • Page
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Recent ...
Replies
Comment: problem installing ENmix package
by
James W. MacDonald
56k
Will you give the full output that you get when installing?
Comment: problem installing ENmix package
by
lea
• 0
I tried both (with the slashes the other way around), it did not work but I delete the package directly on my file browser and it correctly…
Comment: problem installing ENmix package
by
James W. MacDonald
56k
Ugh. You need to convert the back slashes in the call to `unlink` to forward slashes or R will get all huffy with you.
Comment: problem installing ENmix package
by
James W. MacDonald
56k
Ah, that explains it. When R installs a package, it first creates a directory in your library dir called 00LOCK and does a preliminary inst…
Comment: problem installing ENmix package
by
lea
• 0
No but I'm not sure it even install zlibbioc when I asked since I had this response with a "permission denied" at the end: ```r BiocManage…
Votes
SBGNview: Data Analysis, Integration and Visualization on 5000+ Pathways/3000+ Species
A: Minfi issue: return code from pthread_create() is 22
Answer: DiffBind fragmentSize meaning
Answer: Splitting multiple groups - three different ages
Answer: Splitting multiple groups - three different ages
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