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Recent ...
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Comment: biomaRt "longer object length is not a multiple of shorter object length"
by
Linda
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0
Thank you for spotting those typos in my code, James. I have amended my code above (I am getting the same error even with these typos fixed…
Comment: Pathway visualization with pathview doesn't color some genes which in fact appea
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James W. MacDonald
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You need to provide a self-contained example that other people can run. You could for example provide the output from running `dput` on you…
Answer: biomaRt "longer object length is not a multiple of shorter object length"
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James W. MacDonald
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The `rownames` of your count data are 1:N, so you should have no expectation that any Ensembl Gene ID should match. Also what is `seqdata`?…
Comment: How to retrieve genomic coordinates for a list of entrezID and their respective
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James W. MacDonald
55k
And do note that the names of the `GRangesList` you get from `cdsBy` are the NCBI Gene IDs (what you are calling EntrezGene IDs). So you co…
Answer: How to retrieve genomic coordinates for a list of entrezID and their respective
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The TSS is the first base of the transcript, and genes can have multiple transcripts. And the NCBI Gene ID pertains to genes, not transcrip…
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