Showing : DropletUtils • reset
1
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84
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10X FeatureBarcode producing too many "cells"
SingleCellExperiment DropletUtils SingleCellData
10 days ago msn • 0 • updated 7 days ago Aaron Lun ♦ 26k
0
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1
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70
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DropletUtils::swappedDrops - Kallisto instead of CellRanger?
DropletUtils
6 weeks ago mhalache • 0 • updated 6 weeks ago Aaron Lun ♦ 26k
4
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5
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339
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emptyDrops identified less non-empty cells with lower total UMI counts?
DropletUtils scRNA-seq emptyDrops simplesinglecell cell calling
16 months ago C T • 140 • updated 12 weeks ago Aaron Lun ♦ 26k
0
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7
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115
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DropletUtils::swappedDrops more cells than using Read10x with filtered_feature_bc_matrix files
10x genomics DropletUtils single cell RNA seq
10 months ago gil.stelzer • 0 • updated 10 months ago Aaron Lun ♦ 26k
0
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3
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191
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Running DropletUtils::swappedDrops() on multiplexed samples from different libraries
swappeddrops dropletutils
14 months ago rosano • 0 • updated 14 months ago Aaron Lun ♦ 26k
0
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4
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208
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DropletUtils' emptyDrops() fails with non-integer counts
DropletUtils
17 months ago jmanning • 0 • updated 17 months ago Aaron Lun ♦ 26k
2
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1
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650
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Error with DropletUtils::EmptyDrops()
DropletUtils EmptyDrops simpleSingleCell
17 months ago shbrief • 10 • updated 17 months ago Aaron Lun ♦ 26k
0
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1
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155
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emptyDrops result is full NAs
scran dropletUtils scater scRNA-Seq
19 months ago hamza_karakurt • 50
1
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3
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311
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Troubles with barcodeRanks()
DropletUtils SingleCellExperiement DelayedArray simpleSingleCell
20 months ago Steve Pederson • 170 • updated 19 months ago Aaron Lun ♦ 26k
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2
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176
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Scalability of emptyDrops() running times
dropletutils emptydrops
20 months ago rosano • 0 • updated 20 months ago Aaron Lun ♦ 26k
1
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4
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210
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Is there a limitation to the number of cells swappedDrops can handle?
swappedDrops DropletUtils
21 months ago • updated 20 months ago joseph.joonsang • 0
1
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5
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261
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Recommendations for running DropletUtils::swappedDrops() on multiplexed samples from multiple libraries
dropletutils swappeddrops
20 months ago rosano • 0 • updated 20 months ago Aaron Lun ♦ 26k
1
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2
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215
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In which order should you detect empty droplets / remove barcode swapping using DropletUtils?
dropletutils
21 months ago jma1991 • 40 • updated 21 months ago s1437643 • 10
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2
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240
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Segmentation Fault with development versions of R, Bioconductor, and DropletUtils when processing output of CellRanger 3.0.2
DropletUtils Bioc-devel
21 months ago Matthew Thornton • 330
0
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4
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447
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Error importing molecule_info.h5 file generated by Cell Ranger 3.0.2 into DropletUtils
DropletUtils h5
21 months ago Matthew Thornton • 330 • updated 21 months ago Aaron Lun ♦ 26k
0
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1
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221
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Can DropletUtils Package be used to identify cells for 10X VDJ data ?
DropletUtils 10X 5` TCR single cells
22 months ago xingxd16 • 0 • updated 22 months ago Aaron Lun ♦ 26k
2
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2
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415
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What`s new features in DropletUtils version 1.3.10 comapred to version 1.2.2
DropletUtils Bioconductor singel cell
22 months ago xingxd16 • 0 • updated 22 months ago Aaron Lun ♦ 26k
4
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12
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1.0k
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How to identify real cells in 10X RNA-seq ?
single-cell 10X Cell calling DropletUtils cellranger
22 months ago xingxd16 • 0 • updated 22 months ago Aaron Lun ♦ 26k
1
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5
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331
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about DropletUtils and scRNA-seq
dropseq dropletutils droplet
2.0 years ago Bogdan • 610 • updated 2.0 years ago Aaron Lun ♦ 26k
0
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2
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207
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DropletUtils barcodeRanks bug (?)
dropletutils
2.1 years ago jmanning • 0 • updated 2.1 years ago Aaron Lun ♦ 26k
2
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2
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480
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Recommendations for combining multiple 10x runs into one SingleCellExperiment
singlecellexperiment dropletutils simplesinglecell
2.3 years ago Peter Hickey • 460 • updated 2.3 years ago Aaron Lun ♦ 26k
2
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4
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414
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Error when reading data with DropletUtils::read10xCounts
DropletUtils
2.6 years ago fabrost • 0 • updated 2.6 years ago Aaron Lun ♦ 26k
22 results • Page 1 of 1
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Comment: How to use EnrichGo of Cluster Profiler by Lluís Revilla Sancho • 610
Could you share what is the output of `head(gene)`?
Comment: DESeq2 Error: ncol(countData) == nrow(colData) is not TRUE by Pedram • 0
Hello Michael I could not make the same matrix although I did what you said
Comment: Replace a specific nucleotide sequence, at a specific position, with another in by Konstantinos Yeles • 40
Hello @Benjamin-24571 for your example, I can suggest you this code: Read <- c("1","2","3","4") Sequences <- c("ACACCCACG", "AA…
Comment: CHIP Seq Analysis by DiffBind Package by shrinka.genetics • 0
Hello Thanks for your reply. I changed my file format and now it ran. It gave one plot also. All file s are in same directory. No…
Answer: Installing Bioconductor packages in Docker by Konstantinos Yeles • 40
Hello, @adklts-21974 My way to do the installation of packages in a docker is like this: FROM bioconductor/bioconductor_docker…
Votes
A: Interpreting the results from lfcShrink() with apeglm in DESeq2
A: single-cells RNA-seq analysis by MAST with unbalanced group size
single-cells RNA-seq analysis by MAST with unbalanced group size
A: single-cells RNA-seq analysis by MAST with unbalanced group size
A: DESeq2 1.20.0 lfcshrink function
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