Showing : bsgenome • reset
0
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3
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143
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Can BSGenome forge from non-UCSC/NCBI assemblies?
BSgenome
7 weeks ago sophie.harrington • 0 • updated 20 days ago anamaria • 10
2
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2
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116
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Forging a BSGenome
BSgenome microtus forging
6 weeks ago A.J. • 0 • updated 6 weeks ago Hervé Pagès 14k
1
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4
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129
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forging a BSgenome data package - Seed file issue
seedfiles BSgenome
10 weeks ago • updated 9 weeks ago n.mary • 0
2
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2
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141
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How does one modify a single value of a field in a seqinfo object?
GenomicRanges GenomeInfoDb BSgenome isCircular
4 months ago Chris Seidel • 50 • updated 10 weeks ago Hervé Pagès 14k
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3
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120
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submitting a BSgenome package
BSgenome
11 weeks ago deisianyufg • 0 • updated 10 weeks ago Hervé Pagès 14k
0
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3
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203
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Error in Forge the target package (BSgenome)
software error BSgenome
4 months ago • updated 11 weeks ago jiazhou0116 • 0
1
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1
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126
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About generating a seed file (DCF format) for forging a BSgenome
software error BSgenome
4 months ago jiazhou0116 • 0 • updated 4 months ago Hervé Pagès 14k
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0
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65
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Error in loading forged BSgenome
BSgenome msgbsR
4 months ago jiazhou0116 • 0
0
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1
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66
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How can i get repetitive elements genomic ranges in human genome?
repetitive elements IRanges GenomicRanges BSgenome
4 months ago vinod.acear • 50 • updated 4 months ago James W. MacDonald 56k
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1
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60
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error when forging a BSgenome
BSgenome
8 months ago Didi • 10 • updated 8 months ago shepherl 2.5k
0
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4
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181
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Error in seqlevelsStyle after creating a BSgenome package
bsgenome MutationalPatterns
10 months ago • updated 9 months ago sibyl.bertrand • 0
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2
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79
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vmatchPattern error using a DNA string and BSgenome
Biostrings vmatchPattern BSgenome
9 months ago mb2subi • 0
2
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6
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123
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Can't find library BSgenome.Mmulatta.UCSC for latest genome (mmul10)
annotation mmul10 BSgenome
13 months ago P Darakjian • 40 • updated 13 months ago Hervé Pagès 14k
1
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0
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119
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News: New BSgenome data packages for bosTau9, rheMac10, danRer11, and galGal6
BSgenome News
13 months ago Hervé Pagès 14k
2
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1
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92
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Does "exclude" argument break BSgenome::vmatchPattern?
BSgenome
14 months ago Aditya • 120 • updated 14 months ago James W. MacDonald 56k
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6
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1.2k
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Error while attempting to forge BSgenome data package
bsgenome ggbio
6.3 years ago pterry • 0 • updated 14 months ago serfraz.saad • 0
3
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15
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321
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Error in creating BSGenome package
BSGenome
15 months ago zen • 0 • updated 15 months ago James W. MacDonald 56k
0
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3
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254
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Defining BSgenome -> GRanges S4 coercer without package attaching
BSgenome methods GenomicRanges
16 months ago Aditya • 120
2
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3
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158
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What is the use of a masked BSgenome?
BSgenome BSgenome.Mmusculus.UCSC.mm10::Mmusculus Biostrings
17 months ago Aditya • 120 • updated 16 months ago shepherl 2.5k
1
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2
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186
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Is it useful to define and export a setAs('BSgenome', 'GRanges')
BSgenome GenomicRanges
16 months ago Aditya • 120 • updated 16 months ago Michael Lawrence 11k
0
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2
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203
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getBSgenome{Bsgenome}: avoid attaching BiocGenerics (and others)
BSgenome Bsgenome.Mmusculus.UCSC.mm10
17 months ago Aditya • 120
1
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6
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563
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How to subset a BSgenome
BSgenome BSgenome.Mmusculus.UCSC.mm10
17 months ago Aditya • 120 • updated 17 months ago shepherl 2.5k
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6
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197
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error when using matchProbePair with BSgenome.Hsapiens.UCSC.hg19
matchProbePair BSgenome Biostrings BSgenome.Hsapiens.UCSC.hg19
20 months ago svetlana.gorokhova • 0 • updated 20 months ago James W. MacDonald 56k
0
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1
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194
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getSeqSrcpaths (forgeBSgenome) error files not found, but they are right there....
bsgenome forgebsgenome getSeqSrcpaths
22 months ago tguerreroa90 • 0
2
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1
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230
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Do TxDb objects contain info about non-transcriptionally active regions?
TxDb GRanges BSGenome variant annotation
22 months ago jacorvar • 40 • updated 22 months ago James W. MacDonald 56k
0
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9
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315
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Unable to generate feature vector with custom genome in cleanUpdTSeq
cleanUpdTSeq BSgenome BSgenomeForge
22 months ago danielle.bilodeau • 0 • updated 22 months ago Julie Zhu ♦ 4.2k
2
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2
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461
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BSgenome package building
bsgenome
2.3 years ago oussama.badad • 0 • updated 2.3 years ago James W. MacDonald 56k
3
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5
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589
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Include and implement a new reference genome option in the R package BSgenome for downstream variant calling analysis
bsgenome variant calling whole exome sequence gencode reference genome
2.4 years ago svlachavas • 770 • updated 2.4 years ago Hervé Pagès 14k
0
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5
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420
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Custom BSgenome with makeTxDbFromGFF
bsgenome genomicfeatures
2.5 years ago michael.weber.1 • 0
6
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3
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612
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News: New Bioconductor package for dbSNP151
SNPlocs.Hsapiens.dbSNP151.GRCh38 BSgenome News
2.6 years ago Hervé Pagès 14k
0
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1
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310
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extract codon position via BSgenome
bsgenome
2.6 years ago k.rajain1212 • 0 • updated 2.6 years ago Hervé Pagès 14k
1
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12
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1.3k
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error in loadFun(x,seqname,ranges). BSgenome.Hsapiens.UCSC.hg19
bsgenome
2.6 years ago sophialovechan • 10 • updated 2.6 years ago James W. MacDonald 56k
1
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6
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590
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MEDIP: Problem with MEDIPS.createSet
medips bsgenome medip-seq
2.8 years ago vjain • 0 • updated 2.8 years ago Lukas Chavez • 550
2
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3
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514
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What's the best way to retrieve the sizes (lengths) of chromosomes for a reference genome assembly?
bsgenome chromosome reference genome
2.9 years ago Nathan Sheffield • 10 • updated 2.9 years ago Hervé Pagès 14k
2
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1
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439
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Using 'BSgenome::export' to write each chromosome of an organism into separate files
bsgenome biocgenerics bsapply export
2.9 years ago ረ • 0 • updated 2.9 years ago James W. MacDonald 56k
0
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1
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865
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How to name the custom genome in karyoploteR ?
software error R bsgenome karyoploter
3.2 years ago kirannbishwa01 • 0 • updated 3.2 years ago bernatgel • 130
0
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1
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757
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add new genome as Bsgenome object
bsgenome
3.4 years ago sneider.gutierrez01 • 0 • updated 3.4 years ago Martin Morgan 25k
0
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2
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598
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BSgenome.Dmelanogaster.UCSC.dm6 annotation issue
bsgenome BSgenome.Dmelanogaster.UCSC.dm6
3.4 years ago jbeira • 0
1
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3
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1.0k
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BSgenome Sscrofa 11.1
sus scrofa bsgenome
3.4 years ago MartaG • 0 • updated 3.4 years ago Martin Morgan 25k
4
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1
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998
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Getting "negative length vectors are not allowed" error in BSgenome::getSeq
BSgenome getSeq
3.5 years ago rubi • 90 • updated 3.5 years ago Martin Morgan 25k
4
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3
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823
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Extracting sequences from BSgenomeViews object
sequence bsgenome
3.5 years ago nicola.romano • 10 • updated 3.5 years ago Martin Morgan 25k
0
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2
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981
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add annotation features to BSgenome or txdb package
bsgenome txdb annotation orgdb
3.5 years ago Didi • 10
2
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5
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1.0k
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Forge a BSgenome data package
bsgenome bsgenome forge
3.9 years ago • updated 3.5 years ago jodiera • 0
1
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8
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766
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CRISPRseek with genome not available in BSgenome
bsgenome crisprseek
3.9 years ago millepattes.intersites • 0 • updated 3.5 years ago Julie Zhu ♦ 4.2k
0
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2
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544
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Human reference primary assembly and masking using BioStrings and BSgenome
biostrings R bsgenome
3.6 years ago rockyb • 0
5
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9
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1.7k
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mm10 phastCons data for use with ATACseqQC
ATACseqQC bsgenome phastcons rtracklayer
3.7 years ago crysis405 • 10 • updated 3.7 years ago Ou, Jianhong ♦ 1.2k
1
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7
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979
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Mapping Probes to a Genome
BSgenome biostrings probe mapping
4.4 years ago Dario Strbenac ♦ 1.5k • updated 3.7 years ago holgerbrandl • 10
0
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4
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760
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BS genome non-model organism
bsgenome
4.0 years ago • updated 3.9 years ago minie • 0
1
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2
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597
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Error in BSGenome "getSeq" function
R bsgenome getseq
4.0 years ago pm16057 • 0 • updated 4.0 years ago James W. MacDonald 56k
0
Vo