Showing : category • reset
1
Vote
1
Reply
345
Views
Goseq output with too many GO terms per category
go goseq goterm category
2.4 years ago Juan • 0 • updated 2.4 years ago Gordon Smyth 41k
0
Votes
3
Replies
1.1k
Views
Getting Differentially Expressed Genes from GOSeq Categories
goseq gene ontology biomart annotate category
3.6 years ago krc3004 • 10 • updated 3.5 years ago b.nota • 340
0
Votes
4
Replies
3.8k
Views
goseq analysis - extracting list of my genes which are DE in the enriched GO category
GO Category goseq GO Category goseq
9.4 years ago Helen Wright • 10 • updated 4.8 years ago darshinimamindla • 10
1
Vote
0
Replies
833
Views
enrichment analysis for gene pairs
go gostats category gsea
5.3 years ago Hector Corrada Bravo • 60
0
Votes
0
Replies
725
Views
hyperGTest for MSigDB categories
category gostats msigdb hypergeometric test
5.5 years ago petyuk • 70
0
Votes
8
Replies
1.1k
Views
PFAM Enrichment in GOstats
PFAM Category GOstats
5.7 years ago Iain Gallagher • 930 • updated 5.7 years ago Guangchuang Yu ♦ 1.2k
2
Votes
2
Replies
554
Views
rownames for categoryReshape
Category
6.2 years ago alison.sara.waller • 0 • updated 6.2 years ago Martin Morgan 25k
1
Vote
0
Replies
727
Views
how to fetch GO categories from Chinese hamster genome
GO Category goseq
6.4 years ago upendra kumar devisetty • 30
0
Votes
1
Reply
798
Views
GO enrichment
GO Category goseq GO Category goseq
6.5 years ago Guest User ♦ 12k
0
Votes
1
Reply
895
Views
snpStats reference allele used in genetic associations?
SNP Category snpStats SNP Category snpStats
6.7 years ago Guest User ♦ 12k • updated 6.7 years ago Vincent J. Carey, Jr. 6.3k
0
Votes
0
Replies
1.2k
Views
ComBat: 2 adjustment variables & continuous adjustment variables
GO Category sva GO Category sva
6.8 years ago Magda Price • 60
0
Votes
8
Replies
3.3k
Views
ComBat: 3 adjustment variables & continuous adjustment variables
GO Category sva GO Category sva
6.9 years ago Guest User ♦ 12k • updated 6.9 years ago Steve Lianoglou 13k
0
Votes
0
Replies
1.2k
Views
ComBat: 2 adjustment variables & continuous adjustment variables
GO Category sva GO Category sva
6.9 years ago W. Evan Johnson • 830
0
Votes
0
Replies
1.1k
Views
ComBat: 2 adjustment variables & continuous adjustment variables
GO Category sva GO Category sva
6.9 years ago Magda Price • 60
0
Votes
0
Replies
1.1k
Views
R pathview and mouse
Category pathview Category pathview
7.0 years ago Luo Weijun ♦ 1.5k
0
Votes
1
Reply
1.2k
Views
Analysis of Affymetrix Human Gene 2.0 ST arrays
Transcription Annotation Normalization GO hgu133plus2 affy PROcess Category Transcription
7.1 years ago María Maqueda González • 20 • updated 7.1 years ago Federico Lasa • 80
0
Votes
4
Replies
2.7k
Views
Analysis of Affymetrix Human Gene 2.0 ST arrays
Annotation Normalization hgu133plus2 affy PROcess Category Annotation Normalization affy
7.2 years ago Guest User ♦ 12k • updated 7.2 years ago James W. MacDonald 56k
0
Votes
1
Reply
632
Views
GSEABase error parsing msigdb_v4.0.xml
Category Category
7.2 years ago Milica Ng • 10 • updated 7.2 years ago Martin Morgan 25k
0
Votes
0
Replies
740
Views
enrichment packages that accept t-stat (or related stat) as input
Microarray limma Category CAMERA GSVA Microarray limma Category CAMERA GSVA
7.2 years ago Gordon Smyth 41k
0
Votes
0
Replies
627
Views
enrichment packages that accept t-stat (or related stat) as input
Microarray Proteomics limma Category CAMERA GSVA Microarray Proteomics limma Category
7.3 years ago Pekka Kohonen • 190
0
Votes
1
Reply
539
Views
Which package I should use
Sequencing Category Sequencing Category
7.4 years ago Xiaoben Jiang • 10 • updated 7.4 years ago Pet Chiang • 30
0
Votes
7
Replies
3.1k
Views
Simple pathway enrichment analysis for gene lists
Microarray Category gage KEGGREST ROntoTools Microarray Category gage KEGGREST ROntoTools
7.4 years ago enricoferrero • 570 • updated 7.4 years ago Paul Shannon • 450
0
Votes
1
Reply
951
Views
topGO analysis returns different gene counts for category than given for non-model organism
GO Category topGO GO Category topGO
7.4 years ago Diana Toups Dugas • 20 • updated 7.4 years ago Valerie Obenchain ♦ 6.7k
0
Votes
0
Replies
744
Views
new window cairo bundle Re: [Rd] R/Sweave/cairo/freetype bug fix.
Category BEAT Category BEAT
7.6 years ago Hin-Tak Leung • 30
0
Votes
0
Replies
645
Views
Diff Bind consultation
Category DiffBind Category DiffBind
7.7 years ago Rory Stark ♦ 3.5k
0
Votes
0
Replies
623
Views
RE : ChIPpeakAnno_2.8.0 assignCromosomeRegion
annotate Category ChIPpeakAnno annotate Category ChIPpeakAnno
7.7 years ago Julie Zhu ♦ 4.2k
0
Votes
1
Reply
637
Views
[Rd] R/Sweave/cairo/freetype bug fix.
Category Category
7.8 years ago Hin-Tak Leung • 30 • updated 7.8 years ago Simon Urbanek • 60
0
Votes
6
Replies
608
Views
Extract microarray data for genes identified by GO analysis
Microarray GO Category Microarray GO Category
7.9 years ago Guest User ♦ 12k • updated 7.9 years ago James W. MacDonald 56k
0
Votes
2
Replies
1.0k
Views
GSEABase error parsing msigdb_v3.1.xml
GO Infrastructure hgu95av2 Biobase annotate graph Category AnnotationDbi BiocGenerics GO
8.0 years ago Lina Hultin-Rosenberg • 80 • updated 8.0 years ago Martin Morgan 25k
0
Votes
2
Replies
655
Views
Difficulties in using the mgsa package for Gene Set Analysis
GO rat2302 Category mgsa GO rat2302 Category mgsa
8.0 years ago Guest User ♦ 12k • updated 8.0 years ago Sebastian Bauer • 60
0
Votes
0
Replies
463
Views
ChIPpeakAnno
Annotation Category ChIPpeakAnno Annotation Category ChIPpeakAnno
8.2 years ago Julie Zhu ♦ 4.2k
0
Votes
1
Reply
460
Views
HyperGTest 'count' value
Annotation Category Annotation Category
8.2 years ago Mary Kindall • 70
0
Votes
0
Replies
373
Views
strange results with edgeR::goodTuring
Category edgeR Category edgeR
8.4 years ago Gordon Smyth 41k
0
Votes
2
Replies
459
Views
strange results with edgeR::goodTuring
Category edgeR Category edgeR
8.4 years ago Francois Pepin • 80 • updated 8.4 years ago Gordon Smyth 41k
0
Votes
3
Replies
1.2k
Views
oligo and pd.aragene.1.1.st annotation
Annotation limma Category pdInfoBuilder Annotation limma Category pdInfoBuilder
8.5 years ago Stephen Rolfe • 20 • updated 8.5 years ago Marc Carlson ♦ 7.2k
0
Votes
2
Replies
514
Views
easyRNAseq question
Category DESeq easyRNASeq Category DESeq easyRNASeq
8.6 years ago Akula, Nirmala NIH/NIMH [C] • 190 • updated 8.5 years ago Wolfgang Huber 13k
0
Votes
3
Replies
657
Views
GOstats - internal filtering?
Annotation GO hgu133plus2 GOstats Category Annotation GO hgu133plus2 GOstats Category
8.8 years ago Andrew Jaffe • 120 • updated 8.8 years ago James W. MacDonald 56k
0
Votes
0
Replies
605
Views
Biological Pathway Database
Transcription Pathways Category Transcription Pathways Category
8.8 years ago Gita Singh • 10
0
Votes
3
Replies
1.1k
Views
Affymetrix Intronic Normalization Control Probes Differentially Expressed?
probe limma Category probe limma Category
8.9 years ago Alexandra Muñoz • 10 • updated 8.9 years ago James W. MacDonald 56k
0
Votes
0
Replies
733
Views
making use of the Apis mellifera BeeBase assembly 4 data in goseq
Annotation GO Cancer Apis mellifera BSgenome Biostrings Category