Showing : clustering • reset
3
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2
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229
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Clustering differentially expressed genes in response to multiple treatments (using edgeR)
edger complexheatmap R clustering
8 months ago eggrandio • 0 • updated 8 months ago Gordon Smyth 41k
0
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4
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103
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coseq plotting error: no method for coercing this S4 class to a vector
coseq RNAseq clustering
12 months ago minyaaa9058 • 10 • updated 12 months ago andrea.rau • 80
0
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1
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484
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Evaluating HCPC clusters from FactoMineR using cluster.stats from fpc library
clustering r fpc FactoMineR
18 months ago anahochmanova • 0
0
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3
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233
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How to find number of patients (percentage of given population) having high expression of gene A in given microarray data ?
microarray r clustering high expressed genes
20 months ago v.yuvanesh • 0 • updated 20 months ago James W. MacDonald 56k
0
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6
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399
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edgeR removing batch effect before using expression data for clustering
edger r batcheffect clustering removeBatchEffect
20 months ago Biologist • 90 • updated 20 months ago James W. MacDonald 56k
0
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1
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218
Views
Consensus Cluster Plus pre-computed distance matrix
consensusclusterplus distance clustering
22 months ago neuro3030 • 0 • updated 22 months ago chris86 • 390
1
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2
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372
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Dunn Index for Clusters from scRNA-Seq
scRNA-Seq clustering scater scran dunn index
22 months ago hamza_karakurt • 50 • updated 22 months ago Aaron Lun ♦ 26k
2
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4
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692
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Silhouette Plots for Clustering Quality (Multiple Algorithm)
scRNA-Seq RNA-Seq Clustering Silhouette Plot
23 months ago hamza_karakurt • 50 • updated 23 months ago Aaron Lun ♦ 26k
2
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6
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414
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Change the number of clusters with scater
scater scran scrnaseq clustering
2.2 years ago shbrief • 10 • updated 2.2 years ago Aaron Lun ♦ 26k
0
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3
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369
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Coverage profile comparison
Targeted sequencing correlation coverage euclid clustering
2.3 years ago faramer86 • 0
3
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3
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344
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how to plot trends for differentialy expressed genes from normalized count matrix (EdgeR)
edger clustering visualization
2.3 years ago thindmarsmission • 0 • updated 2.3 years ago James W. MacDonald 56k
0
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0
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224
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DESeq aligned with HOPACH for clustering
clustering
2.5 years ago ss • 0
6
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6
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2.2k
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scaling data for clustering heat map
edger heatmap clustering differential gene expression rnaseq
2.6 years ago Beginner • 50 • updated 2.6 years ago Gordon Smyth 41k
0
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4
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524
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Why SPADE package has been removed from bioconductor?
spade release remove clustering
2.7 years ago a.n.horvath • 0 • updated 2.7 years ago James W. MacDonald 56k
0
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1
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346
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Global Trend Analysis using results from EdgeR
EdgeR clustering differential gene expression consensusclusterplus kmeans
2.7 years ago anupriya.dalmia • 0 • updated 2.7 years ago Aaron Lun ♦ 26k
0
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0
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336
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Add samples labels with ConsensusClusterPlus
consensusclusterplus microarray clustering
2.8 years ago aagata.szymanek • 0
1
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0
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620
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Job: UK/EU funded PhD Studentship: Detecting novel subtypes of cancer using data science and machine learning
PhD clustering cancer Job
3.1 years ago • updated 2.8 years ago Daniel Brewer • 80
1
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3
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378
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Clustering of samples based on specific gene sets
microarray differential gene expression gene set analysis clustering
2.9 years ago cherlyn.t • 0
0
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0
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408
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ConsensusClusterPlus without figures
clustering
3.2 years ago jasonji_19950808 • 0
0
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4
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487
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Gene clusters based on gene expression across samples
kmeans gene expression clustering
3.3 years ago • updated 3.2 years ago Jane Merlevede • 90
0
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2
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717
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How to use RUVSeq in clustering problems?
ruvseq rna-seq clustering
3.3 years ago paul.alto • 50 • updated 3.3 years ago davide risso • 850
0
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5
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815
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Choosing genes for clustering
limma clustering differential gene expression hierarchical clustering feature selection
3.4 years ago • updated 3.3 years ago lirongrossmann • 60
1
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3
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583
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Selecting genes that best separate between two groups
limma genefilter ttest clustering TPM
3.3 years ago lirongrossmann • 60
10
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8
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3.9k
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Limma and batch effect
limma differential gene expression clustering removebatcheffect
3.4 years ago lirongrossmann • 60 • updated 3.4 years ago Gordon Smyth 41k
0
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1
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2.1k
Views
When is centering and scaling needed before doing hierarchical clustering?
clustering hierarchical clustering
3.4 years ago hrishi27n • 20 • updated 3.4 years ago chris86 • 390
0
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1
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935
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Observation/case weighting in cluster analysis in R
hclust hierarchical clustering clustering weight
3.5 years ago danielle.newby • 0 • updated 3.5 years ago Aaron Lun ♦ 26k
6
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2
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3.0k
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Cell type specific cell markers for Seurat based analysis.
single cell seurat clustering
3.5 years ago hrishi27n • 20 • updated 3.5 years ago ankur.chakravarthy.10 • 40
1
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4
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566
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OrgDb for Tetrahymena thermophila
annotation clustering
3.7 years ago lin.ying.zhang • 0 • updated 3.7 years ago Guido Hooiveld ♦ 2.8k
1
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1
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3.3k
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WGCNA: Different Detect Cut Heights Across Multiple Blocks
wgcna clustering gene expression
3.8 years ago ngeraci • 10 • updated 3.8 years ago Peter Langfelder ♦ 2.6k
1
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1
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5.2k
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Error using function NbClust regarding multiple values in the argument "index" of package NbClust for getting the optimal number of clusters of a dat…
NbClust clustering looping list object function creation
5.3 years ago svlachavas • 770 • updated 3.8 years ago james.tsakalos • 0
1
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2
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1.2k
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How to adjust the parameters of WGCNA
WGCNA RNA-seq co-expression network module clustering
3.9 years ago xie186 • 0 • updated 3.9 years ago Peter Langfelder ♦ 2.6k
1
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1
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651
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ConsensusClusterPlus matrix error
bioconductor clustering consensusclusterplus
4.0 years ago kyn • 10
0
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5
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1.2k
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Questions on using clusterProfiler
clustering clusterprofiler
4.3 years ago zhangducsu • 0
0
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1
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750
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Question about seed in ConsensusClusterPlus, can't repeat the result
bioconductor consensusclusterplus clustering
4.3 years ago afraTW • 0
0
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0
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1.1k
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showing clusters in neworkd3 from WGCNA data
networkd3 clustering labels
4.5 years ago chrisclarkson100 • 50
0
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2
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956
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maSigPro genes from clusters
masigpro clustering
4.6 years ago ls299 • 0 • updated 4.5 years ago Mª José Nueda • 90
0
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0
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633
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Running Mclust package in R, using maximum a posteriori (MAP)
r mclust clustering
4.6 years ago mabdulsa • 0
0
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3
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1.2k
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Prior Control with Mclust package
R mclust clustering
4.6 years ago mabdulsa • 0 • updated 4.6 years ago Aedin Culhane • 510
2
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6
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1.4k
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Clustering and bootstrapping of RNASeq samples
clustering pvclust vsd edgeR rnaseq
4.7 years ago Jane Merlevede • 90
1
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3
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961
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WGCNA clustering configuration
clustering wgcna microarray
4.7 years ago Lluís Revilla Sancho • 610 • updated 4.7 years ago Peter Langfelder ♦ 2.6k
0
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0
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459
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Analysis of Various chemical compounds on Cytotoxity Cell lines
clustering normalization
4.7 years ago ramars • 0
2
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3
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1.9k
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scran: question on minimum cluster size for computeSumFactors()
scran single cell normalization clustering
4.7 years ago aatsmith • 0
0
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1
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489
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Plot with two separated groups of genes.
scatter-plot clustering
4.8 years ago Adam • 0 • updated 4.8 years ago mrodrigues.fernanda • 10
1
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1
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435
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Clustering like samples with a lot of data
clustering
4.8 years ago gaiusjaugustus • 0
2
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8
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1.3k
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Clustering RNASeq samples from different libraries using DESeq2
clustering DESeq2
4.9 years ago Jane Merlevede • 90
2
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16
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2.1k
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Approaches to group the RNA-Seq samples with large heterogeneity
clustering pca deseq2 edger logfoldchange
4.9 years ago g.atla • 10 • updated 4.9 years ago Michael Love 31k
1
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1
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4.3k
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Mfuzz: fill.NA - Warning messages: argument is not numeric or logical: returning NA