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fourcseq
•
reset
3
Votes
8
Replies
817
Views
FourCSeq - how to write tables with the results
fourcseq
5.3 years ago
francesc.lopez
• 0
• updated 2.2 years ago
ferbecneu
• 0
0
Votes
0
Replies
193
Views
FourCseq extraction of fragments
fourcseq
2.2 years ago
ferbecneu
• 0
1
Vote
1
Reply
236
Views
FourCSeq Pipeline for Capture-C Data
fourcseq
2.6 years ago
mmackiewicz
• 0
• updated 2.6 years ago
felix.klein
• 150
0
Votes
0
Replies
264
Views
FourCSeq: Error in getZScores
fourcseq
getzscores
2.8 years ago
Gustavo Ruiz
• 0
0
Votes
2
Replies
452
Views
FourCSeq - errors in plotZScores
fourcseq
3.5 years ago
rustavo
• 0
• updated 3.5 years ago
Wolfgang Huber
13k
0
Votes
2
Replies
461
Views
FourCseq, rawRanges Description
fourcseq
4.5 years ago
theodore.georgomanolis
• 0
• updated 4.5 years ago
felix.klein
• 150
1
Vote
8
Replies
673
Views
FourCseq: getZScores errors, first case 6 digenerated cutterm second case 4 base cutter
fourcseq
4.5 years ago
theodore.georgomanolis
• 0
0
Votes
2
Replies
424
Views
FourCseq: mixed amount of replication/samples
fourcseq
4.5 years ago
theodore.georgomanolis
• 0
1
Vote
1
Reply
398
Views
FourCseq- adding information manually
fourcseq
4.5 years ago
tlgolan
• 0
• updated 4.5 years ago
felix.klein
• 150
0
Votes
0
Replies
361
Views
FourCseq and local fit
fourcseq
4.6 years ago
tlgolan
• 0
0
Votes
5
Replies
453
Views
local fit and FourCseq
local fit
fourcseq
4.6 years ago
tlgolan
• 0
• updated 4.6 years ago
felix.klein
• 150
0
Votes
3
Replies
493
Views
[FourCSeq] plotDifferences and plotZscores
fourcseq
4.6 years ago
fidlay
• 0
0
Votes
2
Replies
424
Views
FourCSeq- without replicates
fourcseq
4.6 years ago
tlgolan
• 0
• updated 4.6 years ago
felix.klein
• 150
0
Votes
2
Replies
470
Views
plotZScores error in FourCSeq
fourCseq
4.7 years ago
snowhune
• 0
2
Votes
2
Replies
582
Views
FourCSeq- paired-end library ?
fourcseq
4.8 years ago
snowhune
• 0
• updated 4.8 years ago
felix.klein
• 150
2
Votes
4
Replies
945
Views
FourCSeq - how many bases to trim with countFragmentOverlaps
fourcseq
5.3 years ago
francesc.lopez
• 0
• updated 4.8 years ago
felix.klein
• 150
0
Votes
3
Replies
721
Views
Error in "getZScores()" while running FourCSeq package
fourcseq
4.9 years ago
MaddieS
• 0
0
Votes
7
Replies
1.3k
Views
fourCseq - error getZscores
fourcseq
5.2 years ago
samuel collombet
• 140
• updated 5.0 years ago
felix.klein
• 150
0
Votes
3
Replies
584
Views
FourCSeq what is inverse-vst
fourcseq
5.1 years ago
sinhashruti
• 0
• updated 5.0 years ago
felix.klein
• 150
0
Votes
1
Reply
595
Views
FourCSeq problem with getZScores and multiple viewpoints
FourCSeq
getZScores
viewpoints
software error
5.1 years ago
dzis
• 0
1
Vote
10
Replies
1.0k
Views
FourC object from scratch
hi-c
HiTC
fourcseq
5.3 years ago • updated 5.1 years ago
Nicolas Servant
• 260
0
Votes
0
Replies
676
Views
FourC object from scratch
hic-c
hitc
fourcseq
5.3 years ago
Nicolas Servant
• 260
0
Votes
2
Replies
681
Views
FourCSeq problem with getZScores
FourCSeq
5.4 years ago
a.chesi
• 0
• updated 5.4 years ago
felix.klein
• 150
0
Votes
1
Reply
575
Views
FourCSeq - getZScores & getDifferences function
fourcseq
5.5 years ago
mqbsszsy
• 0
• updated 5.5 years ago
felix.klein
• 150
0
Votes
1
Reply
555
Views
FourCSeq - Significant changes between condition without replicate
fourcseq
5.5 years ago
julienpontis
• 0
• updated 5.5 years ago
Wolfgang Huber
13k
0
Votes
1
Reply
492
Views
FourCSeq - Significant Interaction
fourcseq
5.5 years ago
julienpontis
• 0
• updated 5.5 years ago
Wolfgang Huber
13k
0
Votes
1
Reply
438
Views
FourCSeq - data(fc) ?
FourCSeq
5.5 years ago
julienpontis
• 0
• updated 5.5 years ago
Wolfgang Huber
13k
0
Votes
7
Replies
1.1k
Views
FourCseq -problem with countFragmentOverlaps
FourCseq
5.5 years ago
dzis
• 0
• updated 5.5 years ago
Hervé Pagès
14k
4
Votes
27
Replies
1.7k
Views
FourCseq - error countFragmentOverlaps()
FourCseq
fourcseq
5.6 years ago
theodore.georgomanolis
• 0
• updated 5.6 years ago
ericaenjoy3
• 0
2
Votes
4
Replies
723
Views
fourCseq - zscore distribution - trans interractions
fourCseq
6.3 years ago
samuel collombet
• 140
• updated 5.7 years ago
Martin Morgan
25k
0
Votes
11
Replies
923
Views
FourCseq - error ountFragmentOverlaps()
fourcseq
5.9 years ago
samuel collombet
• 140
0
Votes
4
Replies
574
Views
fourCseq - getDifferences and normnalisation
fourcseq
6.2 years ago
samuel collombet
• 140
• updated 6.2 years ago
felix.klein
• 150
32 results • Page
1 of 1
Recent ...
Replies
Comment: How to get both hgnc_symbol and all cdna_coding_start values associated?
by
bastien_chassagnol
• 0
Thanks for your suggest, hoping one day that both nomenclature (HGNC and Ensembl) collaborate more, such that you can get at once all relev…
Comment: DESeq2 and shrinkage of log2 fold changes
by
Michael Love
31k
What do you mean that the set with FDR bound increases? Shrinkage methods in current versions of DESeq2 do not change the FDR (`padj` colum…
Answer: The compare result is different in score and Conc in DiffBind
by
shangguandong1996
• 20
I know in newer DiffBind version, the default of `score` argument is different, So I post a newer DiffBind version result. ``` library(…
Answer: Conc_1 in differnet dba.report result is slightly different
by
shangguandong1996
• 20
For a newer DiffBind version ``` library(DiffBind) library(BiocParallel) library(dplyr) tamoxifen <- dba(sampleSheet="tamoxifen.csv") ta…
Comment: Conc_1 in differnet dba.report result is slightly different
by
shangguandong1996
• 20
Hi, Dr Stark I just find you fixed the link, and I want to use the test data to reproduce my issue ``` library(DiffBind) library(BiocPara…
Votes
Answer: How to get both hgnc_symbol and all cdna_coding_start values associated?
A: Performing differential gene analysis on RT PCR experimental data
A: Performing differential gene analysis on RT PCR experimental data
Comment: DESeq2: Significant padj and LFC in a 0 vs. 20 counts comparison?
A: Using the plotting functions of clusterProfiler / enrichplot with enrichment res
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