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Comment: DESeq2 Error: ncol(countData) == nrow(colData) is not TRUE by Pedram • 0

Hello Michael I could not make the same matrix although I did what you said

Comment: Replace a specific nucleotide sequence, at a specific position, with another in by Konstantinos Yeles • 40

Hello @Benjamin-24571 for your example, I can suggest you this code: Read <- c("1","2","3","4") Sequences <- c("ACACCCACG", "AA…

Comment: CHIP Seq Analysis by DiffBind Package by shrinka.genetics • 0

Hello Thanks for your reply. I changed my file format and now it ran. It gave one plot also. All file s are in same directory. No…

Answer: Installing Bioconductor packages in Docker by Konstantinos Yeles • 40

Hello, @adklts-21974 My way to do the installation of packages in a docker is like this: FROM bioconductor/bioconductor_docker…

Comment: HTqPCR: dealing with technical replicates (filterCategory) and inability to anal by larissa.stanberry • 0

I ran into the same issue. It appears that filtering does not carry over featureData with the exception of featureNames, e.g. call featureD…

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A: DESeq2 1.20.0 lfcshrink function

DEXSeq Usage and Expression Confusion

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