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0
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50
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maSigPro see.genes expression profile graphs. Change color and label text size
maSigPro graph
6 weeks ago Itzel • 0 • updated 5 weeks ago Mª José Nueda • 90
3
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3
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63
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Can't install graph package
graph
9 months ago tyler • 10 • updated 9 months ago Martin Morgan 25k
1
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2
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159
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Library for Node Influence package
Graph gene regulatory network node influence gene ranking
13 months ago omarrafiqued • 50 • updated 13 months ago Kevin Blighe 2.3k
0
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0
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338
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igraph PoTRA error
graph pathways igraph
2.8 years ago genomic8328 • 10
1
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4
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511
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How do I convert kegg info on drug to a format allowing me to calculate similarities?
keggrest chemminer fmcsr graph
2.9 years ago Joris.Meys • 0 • updated 2.9 years ago jennietodd141 • 0
2
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1
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896
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Pathview graph with multiple states/samples or time series
Pathways graph Pathways graph
7.3 years ago Luo Weijun ♦ 1.5k • updated 3.0 years ago atanas.kamburov • 0
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0
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356
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Gviz combine UCSC mm9 conservation and hg19 SNP data
gviz-package graph display
3.2 years ago m • 0
1
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1
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403
Views
How to get the list of the components of all containers from the active RedeR session?
reder graph
3.3 years ago luca.zoccarato • 10 • updated 3.3 years ago m castro • 10
0
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1
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413
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CRISPRseek How to get a correct result of searchHits2 ?
crisprseek graph
3.5 years ago liuyue235 • 0 • updated 3.5 years ago Julie Zhu ♦ 4.2k
0
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1
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667
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Visualizing Linear Model Coefficients in R
R deseq2 graph linear model
3.6 years ago nathanguy14 • 0 • updated 3.6 years ago Michael Love 31k
2
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3
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1.5k
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How to convert graphNEL object into Adjacency Matrix?
graph kegggraph xml
3.7 years ago urwaCFC • 0 • updated 3.7 years ago Robert Castelo ♦ 2.6k
2
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2
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917
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Best practices for converting adj matrix -> graphNEL
graph adjacency matrix
4.1 years ago bryon • 10
1
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1
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463
Views
Fastest way to get the distances between pairs of graph nodes
graph rgbl dag
4.1 years ago rubi • 90 • updated 4.1 years ago Wolfgang Huber 13k
0
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1
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597
Views
ChIPseeker plotAvgProf2: order of panels
graph
4.3 years ago Pufall, Miles A • 20 • updated 4.3 years ago Guangchuang Yu ♦ 1.2k
0
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1
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1.1k
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Gviz Sashimi Plot height/colour/count
graph gviz
4.6 years ago oberlins • 10 • updated 4.4 years ago Robert Ivanek • 660
0
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1
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526
Views
plot pdf error
graph
4.8 years ago anu.kour • 0 • updated 4.8 years ago Axel Klenk • 940
3
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2
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1.4k
Views
Finding nearest neighbors of given hub gene in a co-expression network module
wgcna rbgl graph coexpression hub genes
4.8 years ago Alan Smith • 150 • updated 4.8 years ago Peter Langfelder ♦ 2.6k
1
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1
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693
Views
Rgraphviz and margins
graph Rgraphviz graph Rgraphviz
9.6 years ago Robert Stojnic • 80 • updated 5.0 years ago sebastian.wolf • 0
0
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2
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1.3k
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cummRbund MDSplot error
software error graph R cummerbund
5.1 years ago chenbeijun • 0 • updated 5.1 years ago loyalgoff • 0
2
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2
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962
Views
Ploting with NA values in Gviz (generic function from plot)
Gviz Plot NA graph Job
5.5 years ago Vinicius Henrique da Silva • 40 • updated 5.5 years ago James W. MacDonald 55k
0
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1
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616
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Graph isomorphism in Rcytoscape
graph isomorphism in Rcytoscape
5.6 years ago priyankanimavat.m • 0 • updated 5.6 years ago Diego Diez • 750
0
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1
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1.3k
Views
Graph viewer for Reactome Pathways
bioconductor package reactome graph
5.6 years ago Deepak Tanwar • 10 • updated 5.6 years ago Johannes Rainer ♦ 1.7k
0
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5
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1.0k
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R plot error
r bioconductor graph plot data representation in graphical forms
5.6 years ago megha.24may • 0
0
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2
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1.1k
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How to specifiy colors for polygon links when using circos function of OmicCircos package
graph omiccircos
5.9 years ago wei.shen • 0 • updated 5.9 years ago Hu, Ying NIH/NCI [E] • 50
0
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4
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2.3k
Views
R graphs: all paths lengths between two nodes in a directed graph
graph graph
11.8 years ago Victoria V Plamadeala • 20 • updated 6.0 years ago lo_ken • 0
2
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2
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1.0k
Views
GO offspring consistency
annotation GO graph gene ontology
6.1 years ago jelle.goeman • 0 • updated 6.1 years ago Laurent Gatto 1.4k
0
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3
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920
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generating graph with different rown ames and column names
graph rgraphviz
6.2 years ago tyrone.williams.701 • 0 • updated 6.2 years ago Hervé Pagès 14k
0
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4
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1.4k
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Error for plotDEXSeq and warning for estimateDispersions
graph DEXSeq
6.3 years ago Emmanouela Repapi • 20 • updated 6.3 years ago Alejandro Reyes ♦ 1.7k
0
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1
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925
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Problem in K- means clustering
hgu133plus2 graph hgu133plus2 graph
6.4 years ago Aditya Saxena • 10 • updated 6.4 years ago Sonali Arora • 380
0
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0
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510
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bug in graph::removeEdge() on UGs with graphBAM objects
graph graph
6.5 years ago Robert Castelo ♦ 2.6k
0
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1
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657
Views
updating edge visualization rules of an existing graph in RedeR
graph RedeR graph RedeR
6.5 years ago burak kutlu • 200 • updated 6.5 years ago m castro • 10
0
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1
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781
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Sciplot: Increasing the width of bargraph and decreasing the sapce b/n groups
graph graph
6.7 years ago Roopa Subbaiaih • 130 • updated 6.7 years ago James W. MacDonald 55k
0
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5
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2.4k
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Gviz AnnotationTrack - Consistent y-scales
Coverage Annotation graph Gviz Coverage Annotation graph Gviz
6.7 years ago Aliaksei Holik • 350 • updated 6.7 years ago Lance Parsons • 130
0
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0
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727
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Rgraphviz compilation error
graph Rgraphviz PROcess graph Rgraphviz PROcess
6.7 years ago Kasper Daniel Hansen 6.5k
0
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0
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829
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Plotting per base coverage from genomecoveragebed utility
graph graph
6.7 years ago gv • 40
0
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9
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1.6k
Views
Rgraphviz compilation error
graph graph
6.8 years ago Guest User ♦ 12k • updated 6.8 years ago Vladimir Zhurov • 70
0
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5
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732
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problem with makeGOGraph function
Yeast graph GOstats Yeast graph GOstats
6.8 years ago Guest User ♦ 12k • updated 6.8 years ago James W. MacDonald 55k
0
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0
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1.2k
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edgeR: regarding Poisson distribution and goodness of
Normalization graph edgeR Normalization graph edgeR
6.9 years ago Yunshun Chen • 690
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0
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767
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edgeR: regarding Poisson distribution and goodness of fit graph
Normalization graph edgeR Normalization graph edgeR
6.9 years ago Guest User ♦ 12k
0
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1
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755
Views
how to determine what kind of dispersion to use
graph edgeR graph edgeR
6.9 years ago Guest User ♦ 12k • updated 6.9 years ago Ryan C. Thompson 7.6k
0
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5
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3.0k
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Problem with exporting graph from plotPCA() in a DESeq2 function
graph DESeq2 graph DESeq2
6.9 years ago Guest User ♦ 12k • updated 6.9 years ago Michael Love 31k
0
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2
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1.5k
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What RNA-Seq expression estimates to use for plotting to show voom/limma Differential expression
Visualization graph limma Visualization graph limma
7.0 years ago Heather Estrella • 30 • updated 6.9 years ago Gordon Smyth 41k
0
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1
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614
Views
FLowClust/FLowCore
graph flowCore graph flowCore
7.0 years ago Guest User ♦ 12k • updated 7.0 years ago Jiang, Mike ♦ 1.3k
0
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0
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961
Views
pathview vectorized output?
Pathways graph pathview Pathways graph pathview
7.0 years ago Luo Weijun ♦ 1.5k
0
Votes
1
Reply
743
Views
Statistics questions regarding the use of Ambion ExFold ERCC standards with Affmetrix ST arrays.
Normalization vsn graph Normalization vsn graph
7.0 years ago Matthew Thornton • 330 • updated 7.0 years ago James W. MacDonald 55k
0
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4
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1.0k
Views
RCytoscape: object 'graph' not found error
graph RCytoscape graph RCytoscape
7.1 years ago Christopher T Gregg • 210 • updated 7.1 years ago Paul Shannon • 450
0
Votes
1
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616
Views
bug in graph::addNode() w/ graph::edgeData()
graph graph
7.1 years ago Paul Shannon • 750 • updated 7.1 years ago Robert Castelo ♦ 2.6k
0
Votes
2
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664
Views
bug in graph::addNode() w/ graph::edgeData()
graph graph
7.2 years ago Robert Castelo ♦ 2.6k • updated 7.2 years ago Paul Shannon • 750
0
Votes
2
Replies
1.5k
Views
pathview -- ID Problem?
graph pathview graph pathview
7.2 years ago Luo Weijun ♦ 1.5k • updated 7.2 years ago fabian • 40
0
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6
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1.8k
Views
Directed MST (Edmond's Algorithm)
GO graph RBGL GO graph RBGL
7.2 years ago Forst, Christian • 90 • updated 7.2 years ago Steve Lianoglou 13k
358 results • Page 1 of 8
Recent ...
Replies
Comment: DESeq2 Error: ncol(countData) == nrow(colData) is not TRUE by Pedram • 0
Hello Michael I could not make the same matrix although I did what you said
Comment: Replace a specific nucleotide sequence, at a specific position, with another in by Konstantinos Yeles • 40
Hello @Benjamin-24571 for your example, I can suggest you this code: Read <- c("1","2","3","4") Sequences <- c("ACACCCACG", "AA…
Comment: CHIP Seq Analysis by DiffBind Package by shrinka.genetics • 0
Hello Thanks for your reply. I changed my file format and now it ran. It gave one plot also. All file s are in same directory. No…
Answer: Installing Bioconductor packages in Docker by Konstantinos Yeles • 40
Hello, @adklts-21974 My way to do the installation of packages in a docker is like this: FROM bioconductor/bioconductor_docker…
Comment: HTqPCR: dealing with technical replicates (filterCategory) and inability to anal by larissa.stanberry • 0
I ran into the same issue. It appears that filtering does not carry over featureData with the exception of featureNames, e.g. call featureD…
Votes
A: single-cells RNA-seq analysis by MAST with unbalanced group size
single-cells RNA-seq analysis by MAST with unbalanced group size
A: single-cells RNA-seq analysis by MAST with unbalanced group size
A: DESeq2 1.20.0 lfcshrink function
DEXSeq Usage and Expression Confusion
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