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igraph
•
reset
0
Votes
0
Replies
36
Views
Co-occurrence Network Analysis between Algae and Bacteria
igraph
networkanalysis
Phylogenetics
phyloseq
9 days ago
Chantel
• 0
0
Votes
2
Replies
548
Views
Problems with bioconductor after updating R to 3.6.2
R 3.6.2 update problems with igraph and phangorn update
Phyloseq
igraph
phangorn
Tutorial
13 months ago
crgarcia
• 0
• updated 13 months ago
Martin Morgan
25k
0
Votes
0
Replies
246
Views
igraph clustering for gene coexpression network
igraph
network
gene corexpression
rna-seq
21 months ago
aiswaryabioinfo
• 0
0
Votes
2
Replies
214
Views
STRING_id mismatch with STRINGdb
STRINGdb
igraph
21 months ago
Samuel Lee
• 0
2
Votes
5
Replies
311
Views
Modularity values of clusters and Differential Expression in scRNA-Seq
scater
scran
igraph
scRNA-Seq
rots
23 months ago
hamza_karakurt
• 50
• updated 23 months ago
Aaron Lun
♦ 26k
0
Votes
1
Reply
299
Views
igraph page_rank miR2Pathway: Top ranked list, printing out pathway names
igraph
miR2Pathway
Pathway
page_rank
2.8 years ago
genomic8328
• 10
• updated 2.8 years ago
Martin Morgan
25k
0
Votes
0
Replies
338
Views
igraph PoTRA error
graph
pathways
igraph
2.8 years ago
genomic8328
• 10
0
Votes
2
Replies
1.4k
Views
get vertex xy coords from igraph mst plot
igraph
3.2 years ago
Andrew Box
• 10
1
Vote
1
Reply
807
Views
QuACN and igraph: Error: .validateGraph(g) is not TRUE
QuACN
igraph
3.4 years ago
lljotall
• 10
0
Votes
2
Replies
1.1k
Views
Unable to follow example SPADE usage - Cannot create iterator, invalid vertex id
igraph
spade
5.1 years ago
duncanjamesmurray01
• 0
• updated 3.6 years ago
johnheath346
• 0
0
Votes
0
Replies
965
Views
failed ToPASeq / igraph installation: file present, but not found
installation
package installation
topaseq
igraph
LD_LIBRARY_PATH
4.0 years ago
jan.soderman
• 0
0
Votes
0
Replies
474
Views
project tophits onto a public PPI (protein-protein interaction) dbase to identify neighbours
ppi
network analysis
igraph
4.6 years ago
Abhishek Pratap
• 170
2
Votes
2
Replies
603
Views
taking intersection between 6 networks by graph.intersect
igraph
software error
adjacency matrix
4.7 years ago
Angel
• 40
• updated 4.7 years ago
Paul Shannon
• 450
0
Votes
0
Replies
714
Views
read tree fails for large trees
RamiGO
R
gene ontology
igraph
4.9 years ago
bkellman
• 0
2
Votes
4
Replies
1.6k
Views
getting a directed and unweighted adjacency matrix with igraph package
igraph
5.0 years ago
Angel
• 40
• updated 5.0 years ago
Hervé Pagès
14k
0
Votes
1
Reply
1.2k
Views
Invalid vertex id while running R_igraph_spinglass_my_community on FEM package
FEM
igraph
5.2 years ago
sirintra
• 10
• updated 5.2 years ago
andrew
• 0
0
Votes
4
Replies
1.2k
Views
Package "geNetClassifier": is this an "igraph' error?
software error
geNet
igraph
genetclassifier
5.5 years ago
alakatos
• 110
• updated 5.5 years ago
saibar
• 20
17 results • Page
1 of 1
Recent ...
Replies
Comment: How to use EnrichGo of Cluster Profiler
by
Lluís Revilla Sancho
• 610
Could you share what is the output of `head(gene)`?
Comment: DESeq2 Error: ncol(countData) == nrow(colData) is not TRUE
by
Pedram
• 0
Hello Michael I could not make the same matrix although I did what you said
Comment: Replace a specific nucleotide sequence, at a specific position, with another in
by
Konstantinos Yeles
• 40
Hello @Benjamin-24571 for your example, I can suggest you this code: Read <- c("1","2","3","4") Sequences <- c("ACACCCACG", "AA…
Comment: CHIP Seq Analysis by DiffBind Package
by
shrinka.genetics
• 0
Hello Thanks for your reply. I changed my file format and now it ran. It gave one plot also. All file s are in same directory. No…
Answer: Installing Bioconductor packages in Docker
by
Konstantinos Yeles
• 40
Hello, @adklts-21974 My way to do the installation of packages in a docker is like this: FROM bioconductor/bioconductor_docker…
Votes
A: Interpreting the results from lfcShrink() with apeglm in DESeq2
A: single-cells RNA-seq analysis by MAST with unbalanced group size
single-cells RNA-seq analysis by MAST with unbalanced group size
A: single-cells RNA-seq analysis by MAST with unbalanced group size
A: DESeq2 1.20.0 lfcshrink function
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• 40
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7 minutes ago
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8 minutes ago
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16 minutes ago
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18 minutes ago
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