Showing : iranges • reset
2
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3
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80
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Recycling a DNAStringSet over an IRangesList in extractAt()
Biostrings IRanges
5 weeks ago Nicholas • 0
1
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1
Reply
107
Views
GenomicRanges equivalent to bedtools cluster
IRanges GenomicRanges
9 weeks ago kalamari • 0 • updated 9 weeks ago James W. MacDonald 56k
0
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1
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78
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need help with overlap overrepresentation using permutation tests for composite genomic ranges
regioneR granges iranges
8 months ago Angel Liang • 0 • updated 3 months ago bernatgel • 130
0
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1
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66
Views
How can i get repetitive elements genomic ranges in human genome?
repetitive elements IRanges GenomicRanges BSgenome
4 months ago vinod.acear • 50 • updated 4 months ago James W. MacDonald 56k
0
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1
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79
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how to plot iranges in r version 4.0.0?
IRanges
7 months ago aissabenyoucef • 0
0
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1
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73
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Resources to learn about s4 object extension/inheritance, custom print methods, and new operations
S4 Rcpp InteractionSet IRanges Rle
7 months ago lklei001 • 0 • updated 7 months ago Aaron Lun ♦ 26k
8
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10
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161
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Compare ranges from two GRanges and check if the ranges from the first GRanges is contained in another.
GRanges IRanges
7 months ago omarrafiqued • 50 • updated 7 months ago James W. MacDonald 56k
4
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6
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113
Views
CAGEr - Error with aggregateTagClusters() - invalid class IRanges object: width(x) cannot contain negative integers
CAGEr IRanges aggregateTagClusters
8 months ago mirkocelii • 40
0
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0
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53
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No methods found in package Biobase for request: read.AnnotatedDataFrame
software error biobase Iranges ArrayExpressHTS
10 months ago Ed Siefker • 230
6
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11
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2.7k
Views
Intergenic coordinates with Genomic Feaures
genomicranges genomicfeatures iranges
5.8 years ago cookie • 20 • updated 12 months ago mohancm89 • 0
0
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0
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142
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Is the ballgownrsem function still supported?
ballgown rsem iranges
13 months ago YH • 0
0
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4
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293
Views
IRanges: solving row 5: range cannot be determined from the supplied arguments (too many NAs)
IRanges rtracklayer
14 months ago jovel_juan • 10 • updated 14 months ago James W. MacDonald 56k
0
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0
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96
Views
DMDeepm6A: solve_user_SEW0", start, end, width, PACKAGE = "IRanges
rtracklayer IRanges DMDeepm6A
14 months ago jovel_juan • 10
0
Votes
1
Reply
451
Views
Error in IRanges, In range 1: 'end' must be >= 'start' - 1.: .Call2(\"solve_user_SEW0\", start, end, width, PACKAGE = \"IRanges\")"
Genomicranges IRanges
15 months ago bioinagesh • 0 • updated 15 months ago James W. MacDonald 56k
0
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7
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184
Views
Best way to subset one IRanges by list of IRanges
iranges
16 months ago Robert M. Flight • 280
1
Vote
3
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295
Views
Correct way to split and unsplit a DataFrame
s4vectors iranges
17 months ago Michael Steinbaugh • 70 • updated 17 months ago Michael Lawrence 11k
0
Votes
1
Reply
188
Views
Diffbind problems with negative widths in IRanges and chromosome ranges after dba.report
diffbind IRanges
17 months ago akutsch • 0 • updated 17 months ago Rory Stark ♦ 3.5k
0
Votes
1
Reply
199
Views
Annotating protein sequences
Protein iranges sequencing
22 months ago ieuangw • 0
2
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2
Replies
646
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Error in installation of scran
S4Vectors IRanges XVector GenomicRanges scran
2.0 years ago Momo • 0 • updated 2.0 years ago Aaron Lun ♦ 26k
4
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2
Replies
377
Views
Speed efficient way to select the n-th element from GRangsList
R GenomicRanges IRanges
2.1 years ago foehn • 60
3
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7
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4.7k
Views
Non overlapping granges (or opposite of subsetByOverlaps)
granges genomicranges iranges subsetByOverlaps
5.3 years ago vinod.acear • 50 • updated 2.1 years ago doublehelix31 • 0
2
Votes
1
Reply
334
Views
Bug in follow and precede
software error genomicranges iranges
2.2 years ago abc • 0 • updated 2.1 years ago Valerie Obenchain ♦ 6.7k
0
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3
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303
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GenomicRanges based on indices or more conditions, and add column from match
genomicranges iranges findoverlaps
2.3 years ago francesca casalino • 50
2
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3
Replies
405
Views
Gaia results including negative widths
gaia genomicranges iranges
2.5 years ago Talip Zengin • 10 • updated 2.5 years ago Sandro Morganella • 30
2
Votes
1
Reply
288
Views
IRanges seqselect and subsetByRanges
Iranges defunct
2.5 years ago joseluis.ruiz • 0 • updated 2.5 years ago Michael Lawrence 11k
0
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15
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618
Views
Looking for the source for IRanges 2.8.1, S4Vectors 0.12.1 and XVector 0.14.0
bioconductor iranges s4vectors xvector r 3.3.2
2.5 years ago chokoiboko • 0 • updated 2.5 years ago becker.gabriel • 10
0
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0
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329
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IRanges error while input rsem data into ballgown : .Call2("solve_user_SEW0", start, end, width, PACKAGE = "IRanges")
ballgown rsem iranges
2.5 years ago kicheol.kim • 0
1
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0
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972
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IRanges error while input rsem data into ballgown : .Call2("solve_user_SEW0", start, end, width, PACKAGE = "IRanges")
ballgown rsem iranges
2.6 years ago • updated 2.5 years ago kicheol.kim • 0
0
Votes
1
Reply
391
Views
TEQC - new version Bioc - problem with IRanges
teqc iranges
2.6 years ago msourdeix • 0 • updated 2.6 years ago m.hummel • 10
0
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0
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289
Views
Avoid rotating vector when doing arithmetic on different length IRanges RleList entries
iranges s4vectors rle rlelist
2.6 years ago endrebak85 • 30
2
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2
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724
Views
IRanges which are not S4 generic: endoapply mendoapply error in loading oligoclasses
iranges oligoclasses BiocGenerics
2.6 years ago GENOMIC_region • 0
0
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1
Reply
311
Views
CNRegions gives error in IRanges Package
CNregions iranges iClusterPlus
2.6 years ago sumonaray55 • 0
0
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2
Replies
376
Views
VariantAnnotation::locateVariants error coming from XVector
variantannotation xvector iranges
2.7 years ago Vivek.b • 100
2
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5
Replies
1.9k
Views
unlist doesn't work for IRanges
iranges
2.7 years ago li lilingdu • 450 • updated 2.7 years ago James W. MacDonald 56k
1
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2
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443
Views
Detecting Overlaps within Grange Object
r grange granges iranges
2.8 years ago g.k • 0 • updated 2.8 years ago Michael Lawrence 11k
0
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5
Replies
495
Views
HiTC importC not working
HiTC IRanges windows debian
2.9 years ago René Wiegandt • 0 • updated 2.9 years ago Nicolas Servant • 260
0
Votes
1
Reply
550
Views
Error in .Primitive("c")(<S4 object of class "IRanges">) : could not find symbol "recursive" in environment of the generic function running msa
msa iranges
3.0 years ago mtorresp1975 • 0 • updated 3.0 years ago UBodenhofer • 250
0
Votes
1
Reply
430
Views
Error in export ifelse from IRanges
iranges ifelse package namespace export
3.0 years ago dalibor.miklik • 0 • updated 3.0 years ago James W. MacDonald 56k
2
Votes
2
Replies
461
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Packages employing RangedSummarizedExperiment objects
rangedsummarizedexperiment packages granges iranges
3.1 years ago rbronste • 60 • updated 3.1 years ago Aaron Lun ♦ 26k
1
Vote
4
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1.4k
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biocLite updating problem with Ubuntu 17.10
ubuntu biocgenerics s4vectors IRanges annotationdbi
3.1 years ago KRA • 0 • updated 3.1 years ago Martin Morgan 25k
0
Votes
1
Reply
460
Views
Rcpp adding circular ranges to GRanges object in c++
GRanges circular rcpp IRanges
3.1 years ago hauken_heyken • 70
4
Votes
17
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1.5k
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How to construct a valid GRanges object from RCPP and pass back to R
GRanges IRanges RCPP Constructor
3.3 years ago hauken_heyken • 70 • updated 3.2 years ago fedor.bezrukov • 10
0
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0
Replies
429
Views
resize functions causes an error - "could not find function "unsafe.update"
genomicranges iranges resize
3.2 years ago Assa Yeroslaviz ♦ 1.5k
7
Votes
4
Replies
973
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BiocGenerics built with R 3.4.2 changes behaviour
biocgenerics iranges variantannotation
3.3 years ago ginggs • 40 • updated 3.3 years ago Hervé Pagès 14k
6
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6
Replies
669
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Implementing fast mathematical and statistical operations on genomic variables in bioconductor
genomicranges biocgenerics rlelist genomicvars iranges
3.3 years ago Devin King • 20 • updated 3.3 years ago Hervé Pagès 14k
0
Votes
4
Replies
531
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Problem with IRanges and GenomicRanges
iranges genomicranges
3.4 years ago spollack • 0 • updated 3.4 years ago Hervé Pagès 14k
1
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4
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837
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IRanges (GRanges): Inconsistent behaviour when overlapping ranges of width 0
Iranges granges
3.4 years ago balwierz • 40 • updated 3.4 years ago Hervé Pagès 14k
0
Votes
3
Replies
835
Views