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Comment: Conc_1 in differnet dba.report result is slightly different by shangguandong1996 • 20

I use `as_tibble` to convert `Grange` objecet, and then use write_csv. The basic command is like below ``` # I have to admit this examp…

Answer: Limma help (creating design matrix) by James W. MacDonald 55k

There's no need to do the second line in your example. The limma package is quite happy to accept an `ExpressionSet` as input, so you don't…

Answer: Rhdf5lib installation problem by Mike Smith ♦ 4.8k

Thanks for the details. The error occurs at the following step: ``` ../libtool: line 7486: cd: -/: invalid option ``` and I think …

Comment: Normalization for two bulk RNA datasets with different library sizes by Michael Love 31k

Given that tissues are nested within dataset, and you are interested in looking at time differences within tissue, I'd recommend processing…

Comment: Normalization for two bulk RNA datasets with different library sizes by K. • 0

I would like to retrieve a list of target genes in all tissues after certain pathway activation to evaluate to what extent are the target g…

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Answer: Limma help (creating design matrix)

How to better design a Volcano plot

Comment: How to better design a Volcano plot

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