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masigpro
•
reset
0
Votes
1
Reply
50
Views
maSigPro see.genes expression profile graphs. Change color and label text size
maSigPro
graph
6 weeks ago
Itzel
• 0
• updated 5 weeks ago
Mª José Nueda
• 90
0
Votes
2
Replies
109
Views
maSigPro see.genes function gives "invalid 'times' argument" error for single time course data
masigpro
7 months ago • updated 8 days ago
daw277
• 0
0
Votes
0
Replies
67
Views
maSigPro: PlotGroups function only plots one out of six time points
maSigPro
PlotGroups
5 months ago
Olof.rundquist
• 0
• updated 5 months ago
lester.clayton
• 0
0
Votes
2
Replies
53
Views
maSigPro Influential genes, step.methods and gene removal
maSigPro
TimeCourse
7 months ago
DcL-A
• 0
• updated 7 months ago
Michael Love
31k
0
Votes
2
Replies
60
Views
MaSigPro Single Series Analysis
maSigPro
10 months ago
dorothy.mitchell
• 0
0
Votes
1
Reply
357
Views
glm.fit problem with maSigPro
software error
maSigPro
Nueda
RNAseq
23 months ago
lalamig
• 0
• updated 23 months ago
James W. MacDonald
55k
1
Vote
3
Replies
260
Views
masigpro: could not find function "negative.binomial"
masigpro
2.2 years ago
nicolas.descostes
• 20
0
Votes
6
Replies
869
Views
[maSigPro] two color array analysis of time series in different cell lines.???
limma
maSigPro
limma
maSigPro
7.3 years ago
neeraj rana
• 60
• updated 2.4 years ago
sbbinfo90
• 0
0
Votes
5
Replies
3.5k
Views
masigpro Error in terms.formula(formula, data = data) : '.' in formula and no 'data' argument
masigpro
5.6 years ago
john
• 100
• updated 2.8 years ago
naets_matthias
• 0
0
Votes
1
Reply
627
Views
maSigPro: error using see.genes()
masigpro
3.7 years ago
valentine.murigneux
• 0
• updated 2.8 years ago
therealsisterdot
• 0
3
Votes
5
Replies
648
Views
MasigPro and estimation of theta for negative binomial law
R
masigpro
edgr
rnaseq
negative binomial model
3.0 years ago
nicolas.hipp
• 10
3
Votes
7
Replies
1.7k
Views
Limma PlotMDS: what values should be used?
limma
edger
plotmds
tmm
masigpro
3.1 years ago
dacaba.92
• 10
0
Votes
0
Replies
457
Views
Understanding NextMaSigPro, regression fit and stepwise regression
timecourse
rnaseq
masigpro
3.1 years ago
jelisaveta.jeki.djordjevic
• 0
0
Votes
0
Replies
402
Views
How to specify covariates in maSigPro analysis (like limma)
masigpro
covariates
limma
differential expression
time-course
3.3 years ago
veersingh.marwah
• 0
0
Votes
0
Replies
422
Views
Iso-maSigPro errors in IsoModel and PodiumChange
masigpro
3.3 years ago
xin.zhou
• 0
0
Votes
1
Reply
399
Views
Are significant genes ordered in maSigPro?
masigpro
rnaseq
3.6 years ago
itspilipineiro
• 0
• updated 3.6 years ago
James W. MacDonald
55k
0
Votes
0
Replies
5.0k
Views
maSigPro error PlotGroups [Error: (list) object cannot be coerced to type 'double']
masigpro
error
PlotGroups
3.6 years ago
nicolas.descostes
• 20
0
Votes
0
Replies
401
Views
Block design for maSigPro
masigpro
timecourse
4.4 years ago
sanj
• 20
0
Votes
2
Replies
952
Views
maSigPro genes from clusters
masigpro
clustering
4.6 years ago
ls299
• 0
• updated 4.5 years ago
Mª José Nueda
• 90
0
Votes
0
Replies
430
Views
maSigPro groups comparisons
masigpro
4.5 years ago
ls299
• 0
0
Votes
1
Reply
718
Views
maSigPro edesign and error message
masigpro
4.8 years ago
simonjean434
• 10
0
Votes
0
Replies
527
Views
MaSigPro - pre-filtering of genes
MaSigPro
4.9 years ago
GFM
• 20
0
Votes
1
Reply
953
Views
Microarray time-course clustering, using "hclust" in masigPro
clustering
hclust
maSigPro
5.5 years ago
dimitri.leonid.lindenwald
• 50
• updated 4.9 years ago
efejiroe
• 0
0
Votes
1
Reply
1.8k
Views
maSigPro help- p. vector error
RNASeq
maSigPro
a4
RNASeq
maSigPro
a4
6.9 years ago
Guest User
♦ 12k
• updated 5.3 years ago
Mª José Nueda
• 90
0
Votes
2
Replies
562
Views
row with zeros
maSigPro
min.obs
p.vector
5.3 years ago
gmdc
• 0
• updated 5.3 years ago
Mª José Nueda
• 90
0
Votes
1
Reply
638
Views
Paralelization of maSigPro
maSigPro
parallel
5.3 years ago
gmdc
• 0
0
Votes
1
Reply
949
Views
RNASeq time-course analysis with maSigPro: T.fit error when assessing multiple groups
rnaseq
masigpro
timecourse
5.7 years ago
Ryan Goosen
• 0
0
Votes
1
Reply
497
Views
maSigPro dataset information
maSigPro
maSigPro
7.3 years ago
Guest User
♦ 12k
0
Votes
3
Replies
751
Views
maSigPro and "vars" argument
maSigPro
maSigPro
9.4 years ago
Andrea Grilli
• 240
• updated 9.4 years ago
Mª José Nueda
• 90
0
Votes
1
Reply
916
Views
maSigPro and "subscript out of bounds"
Normalization
Regression
maSigPro
Normalization
Regression
maSigPro
9.6 years ago
Valerie Obenchain
♦ 6.7k
• updated 9.6 years ago
Andrea Grilli
• 240
0
Votes
0
Replies
732
Views
maSigPro and "subscript out of bounds"
Normalization
Regression
maSigPro
Normalization
Regression
maSigPro
9.6 years ago
Andrea Grilli
• 240
0
Votes
0
Replies
710
Views
[maSigPro] Splitting data - how?
maSigPro
maSigPro
9.7 years ago
Valerie Obenchain
♦ 6.7k
0
Votes
1
Reply
704
Views
Paired Data in maSigPro
maSigPro
maSigPro
10.1 years ago
Mike Walter
• 230
0
Votes
3
Replies
652
Views
[maSigPro] T.fit - Error in rownames(coefficients)
maSigPro
maSigPro
10.2 years ago
Maciej Jończyk
• 720
• updated 10.2 years ago
Mª José Nueda
• 90
0
Votes
1
Reply
636
Views
clustering of microarray time-series data
Microarray
Clustering
limma
maSigPro
Microarray
Clustering
limma
maSigPro
10.3 years ago
Maciej Jończyk
• 720
• updated 10.3 years ago
avehna
• 240
0
Votes
1
Reply
888
Views
Design matrix for time course analysis with maSigPro
GLAD
maSigPro
GLAD
maSigPro
10.7 years ago
Matthias Boeck
• 10
• updated 10.6 years ago
Wolfgang Huber
13k
0
Votes
1
Reply
1.1k
Views
[maSigPro] Error in T.fit - NAs introduced by coercion
maSigPro
maSigPro
10.7 years ago
Maciej Jończyk
• 720
• updated 10.7 years ago
Mª José Nueda
• 90
0
Votes
3
Replies
667
Views
[maSigPro] How to analyze 2-colour microarrays?
Normalization
limma
maSigPro
Normalization
limma
maSigPro
10.8 years ago
Maciej Jończyk
• 720
• updated 10.7 years ago
Mª José Nueda
• 90
0
Votes
1
Reply
679
Views
Fwd: maSigPro - NA values for coefficient estimates - Is a polynomical fit recommended for my data?
Annotation
limma
maSigPro
a4
Annotation
limma
maSigPro
a4
11.2 years ago
Ana Conesa
• 340
• updated 11.2 years ago
jeremy wilson
• 150
0
Votes
0
Replies
617
Views
maSigPro - NA values for coefficient estimates - Is a polynomical fit recommended for my data?
limma
maSigPro
a4
limma
maSigPro
a4
11.2 years ago
jeremy wilson
• 150
0
Votes
1
Reply
726
Views
maSigPro error in getting a design matrix
maSigPro
a4
maSigPro
a4
11.2 years ago
lohith madireddy
• 40
0
Votes
2
Replies
650
Views
question about p-values in maSigPro
affy
maSigPro
affy
maSigPro
11.5 years ago
Dick Beyer
♦ 1.4k
0
Votes
3
Replies
550
Views
maSigPro and EMV no longer available for windows.
maSigPro
maSigPro
11.7 years ago
Giulio Di Giovanni
• 540
• updated 11.7 years ago
Ana Conesa
• 340
0
Votes
0
Replies
804
Views
maSigPro time problem (2.trial)
maSigPro
maSigPro
11.7 years ago
Klaus-Peter Pleissner
• 70
0
Votes
1
Reply
615
Views
MaSigPro
maSigPro
maSigPro
13.2 years ago
Narinder Singh Sahni
• 50
• updated 13.2 years ago
Mª José Nueda
• 90
0
Votes
2
Replies
452
Views
Time course cDNA two color array analysis
TimeCourse
limma
timecourse
maSigPro
TimeCourse
limma
timecourse
maSigPro
14.0 years ago
Marcelo Laia
• 440
0
Votes
0
Replies
624
Views
microarray analysis of a dose response * strain experiment
Microarray
affy
limma
maSigPro
DOSE
BRAIN
Microarray
affy
limma
maSigPro
DOSE
BRAIN
14.2 years ago
Naomi Altman
♦ 6.0k
47 results • Page
1 of 1
Recent ...
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Comment: DESeq2 Error: ncol(countData) == nrow(colData) is not TRUE
by
Pedram
• 0
Hello Michael I could not make the same matrix although I did what you said
Comment: Replace a specific nucleotide sequence, at a specific position, with another in
by
Konstantinos Yeles
• 40
Hello @Benjamin-24571 for your example, I can suggest you this code: Read <- c("1","2","3","4") Sequences <- c("ACACCCACG", "AA…
Comment: CHIP Seq Analysis by DiffBind Package
by
shrinka.genetics
• 0
Hello Thanks for your reply. I changed my file format and now it ran. It gave one plot also. All file s are in same directory. No…
Answer: Installing Bioconductor packages in Docker
by
Konstantinos Yeles
• 40
Hello, @adklts-21974 My way to do the installation of packages in a docker is like this: FROM bioconductor/bioconductor_docker…
Comment: HTqPCR: dealing with technical replicates (filterCategory) and inability to anal
by
larissa.stanberry
• 0
I ran into the same issue. It appears that filtering does not carry over featureData with the exception of featureNames, e.g. call featureD…
Votes
A: single-cells RNA-seq analysis by MAST with unbalanced group size
single-cells RNA-seq analysis by MAST with unbalanced group size
A: single-cells RNA-seq analysis by MAST with unbalanced group size
A: DESeq2 1.20.0 lfcshrink function
DEXSeq Usage and Expression Confusion
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