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mast
•
reset
0
Votes
0
Replies
31
Views
MAST zlm shows warning: Coefficients ... are never estimible and will be dropped.
MAST
6 days ago
Helene
• 0
0
Votes
0
Replies
47
Views
How to do pairwise multiple comparisons in MAST
MAST
8 days ago
sysumed3615
• 0
0
Votes
2
Replies
90
Views
MAST compare two conditions with several donors
MAST
3 months ago
sofia.puvogel
• 0
• updated 22 days ago
Emanuele
• 0
0
Votes
3
Replies
319
Views
MAST invalid Hypothesis, class objectORconnection error
R
MAST
scRNASeq
6 months ago
TriS
• 200
1
Vote
3
Replies
165
Views
comparing 2 models with confounders with MAST (scRNA-seq DEA)
scRNA-seq
MAST
confounders
13 months ago
ramonmassoni
• 10
• updated 13 months ago
Andrew_McDavid
• 260
0
Votes
1
Reply
215
Views
About getting DE genes using MAST
MAST
14 months ago
ahmed.abbas
• 0
• updated 14 months ago
Andrew_McDavid
• 260
0
Votes
0
Replies
178
Views
DEG among experimental and control group in MAST
MAST
DEG
batch effects
17 months ago
chendianyu
• 0
0
Votes
1
Reply
177
Views
Minimum number of cells required for the MAST
MAST
scRNAseq
differential expression
18 months ago
Andrew_McDavid
• 260
2
Votes
3
Replies
331
Views
Logistic regression in MAST - question
mast
23 months ago
Nik Tuzov
• 70
• updated 23 months ago
Andrew_McDavid
• 260
2
Votes
7
Replies
397
Views
Estimation of non-trivial contrasts in MAST
mast
23 months ago
Nik Tuzov
• 70
• updated 23 months ago
Andrew_McDavid
• 260
0
Votes
0
Replies
265
Views
How can I compute AIC for MAST hurdle model fitted in the whole dataset?
MAST
AIC calcuation
Parameters
single cell
hurdle model
2.0 years ago
mcalgaro93
• 0
0
Votes
2
Replies
373
Views
Warning in bayes fit in MAST GSEA
MAST
GSEA
bayesglm.fit
2.5 years ago
santos22903
• 0
0
Votes
6
Replies
435
Views
Error in zlm function model matrix
MAST
2.8 years ago
jka8119
• 10
2
Votes
4
Replies
571
Views
Interpretation of cngeneson when doing differential expression analysis in MAST
mast
differential gene expression
2.8 years ago
francesco.brundu@gmail.com
• 40
• updated 2.8 years ago
Andrew_McDavid
• 260
2
Votes
1
Reply
675
Views
MAST: testing differential expression with a nested factorial design
MAST
single-cell
rna-seq
2.9 years ago
khandarius
• 20
• updated 2.9 years ago
Andrew_McDavid
• 260
2
Votes
1
Reply
348
Views
How to load data csv in MAST
mast
2.9 years ago
francesco.brundu@gmail.com
• 40
0
Votes
4
Replies
425
Views
MAST: What does the function gseaAfterBoot do exactly?
MAST
2.9 years ago
dfm2129
• 0
0
Votes
8
Replies
534
Views
MAST - not getting Hurdle p values
MAST
3.0 years ago
jka8119
• 10
• updated 3.0 years ago
Andrew_McDavid
• 260
1
Vote
3
Replies
765
Views
Using MAST with DropSeq data
MAST
mast
dropseq
3.1 years ago
jeremycfd
• 0
• updated 3.1 years ago
Andrew_McDavid
• 260
4
Votes
3
Replies
621
Views
single-cells RNA-seq analysis by MAST with unbalanced group size
mast
single-cell
rna-seq
differential analysis
3.1 years ago
shao
• 90
• updated 3.1 years ago
Andrew_McDavid
• 260
0
Votes
2
Replies
494
Views
What is the most useful distance measure to use for cell clustering based on MAST deviance residuals?
MAST
3.4 years ago
alexanderaivazidis
• 0
3
Votes
3
Replies
983
Views
How do you test a contrast in MAST?
MAST
single-cell
differential gene expression
3.4 years ago
Shian Su
• 40
• updated 3.4 years ago
Andrew_McDavid
• 260
4
Votes
1
Reply
781
Views
NAs in continuous coefficient and fold change in `zlm`
scrnaseq
MAST
differential gene expression
3.5 years ago
Andrew_McDavid
• 260
2
Votes
1
Reply
1.9k
Views
Intepretation of Z scores for gene set enrichment analysis in MAST
MAST
scRNA
GSEA
3.6 years ago
siajunren
• 0
• updated 3.6 years ago
Andrew_McDavid
• 260
0
Votes
3
Replies
522
Views
Modeling Dose-response data in MAST
MAST
sc-rnaseq
scrnaseq
3.6 years ago
eleanorahowe
• 0
• updated 3.6 years ago
Andrew_McDavid
• 260
0
Votes
1
Reply
583
Views
Removal of batch effects before non-linear clustering for scRNAseq
scrnaseq
MAST
3.8 years ago
Andrew_McDavid
• 260
3
Votes
2
Replies
882
Views
MAST reported warning "Coefficients ... are never estimible and will be dropped."
mast
sc-rnaseq
3.9 years ago
shao
• 90
27 results • Page
1 of 1
Recent ...
Replies
Comment: How to launch the RnBeads Data Juggler?
by
Federica
• 0
It worked! Thank u so much for your help!
Answer: makeTxDbFromUCSC("mm10", "refGene") gives "not supported" error
by
James W. MacDonald
56k
As you have noted, this was fixed last November: ``` > makeTxDbFromUCSC("mm10","refGene") Download the refGene table ... OK Download …
Comment: goseq package loading issues
by
James W. MacDonald
56k
Usually if there is a 00LOCK dir, it tells you that. What you are seeing may instead be due to more than one R session running concurrently…
Comment: How to launch the RnBeads Data Juggler?
by
James W. MacDonald
56k
You need to [install Rtools][1] to be able to compile source packages. After which it works fine: ``` > install("pillar") Bioconductor ve…
Comment: goseq package loading issues
by
avinashi
• 0
Hi, I tried doing this. When using valid (), I saw that there were packages that needed updating so I ran: ```r BiocManager::install(c( …
Votes
Comment: How to launch the RnBeads Data Juggler?
Comment: Dealing with my.contrasts with replicates containing nested samples
Answer: How to launch the RnBeads Data Juggler?
Answer: How to find the source code of the package STRINGdb ?
Comment: DESeq2 extracting relevant contrasts with interactions
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