Showing : medips • reset
3
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17
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777
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Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
illimina 450k methylation qsea MEDIPS TCGA
3.8 years ago justinburgener • 10 • updated 5 months ago Matthias Lienhard • 140
2
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4
Replies
82
Views
MEDIPS results differ with sample ordering
MEDIPS edgeR
12 months ago keegan • 60 • updated 8 months ago Lukas Chavez • 550
2
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1
Reply
97
Views
MEDIPS - Error in MEDIPS.CpGenrich
MEDIPS
10 months ago gaurav4thareja • 10 • updated 10 months ago Lukas Chavez • 550
1
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1
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60
Views
MEDIPS.CpGenrich now that RangedData is deprecated
MEDIPS RangedData GenomicRanges
10 months ago emham • 0 • updated 10 months ago Lukas Chavez • 550
0
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2
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59
Views
Read counts between QSEA and MEDIPs
qsea medips
11 months ago Simon Pearce • 0 • updated 11 months ago Matthias Lienhard • 140
0
Votes
1
Reply
81
Views
Extracting normalized counts in MEDIPS
MEDIPS MeDIP-seq
14 months ago lshepard • 40 • updated 14 months ago Lukas Chavez • 550
0
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0
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71
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Why does MEDIPS only import read 1 when paired=TRUE for MEDIPS.createSet()function ?
#MEDIPS MEDIPS
14 months ago agm • 0
1
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1
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256
Views
sva correction for MEDIPS
MEDIPS svaseq sva
24 months ago tofukaj • 0 • updated 24 months ago Lukas Chavez • 550
0
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0
Replies
345
Views
error importing bam file for MEDIPS analysis
MEDIPS bamfile
2.2 years ago oussama.badad • 0 • updated 2.0 years ago Bioconductor Community 0
1
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2
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281
Views
Comparing more than 2 experimental groups with MEDIPS?
medips medip-seq dna methylation dmr analysis
2.2 years ago mtefit • 0 • updated 2.1 years ago Lukas Chavez • 550
0
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2
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360
Views
create.set on MEDIPS
medips createset
2.2 years ago oussama.badad • 0 • updated 2.2 years ago Lukas Chavez • 550
0
Votes
4
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324
Views
CpG density in MEDIPS
CpG MEDIPS
2.3 years ago saripalligautam86 • 10
0
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0
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229
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Indexing large chromosomes (like wheat) bam files in Rsamtools
Rsamtools QSEA MEDIPS
2.3 years ago saripalligautam86 • 10
0
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3
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317
Views
Coupling set error in MEDIPS
medips coupling set error cpg density
2.3 years ago saripalligautam86 • 10
0
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0
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195
Views
CouplingSet error in MeDIPS
MEDIPS coupling set error
2.3 years ago saripalligautam86 • 10
0
Votes
3
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418
Views
MEDIPS - Annotation output explanation
MEDIPS Output
2.7 years ago vjain • 0
1
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6
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590
Views
MEDIP: Problem with MEDIPS.createSet
medips bsgenome medip-seq
2.8 years ago vjain • 0 • updated 2.8 years ago Lukas Chavez • 550
3
Votes
1
Reply
438
Views
RMS question in MEDIPS
RMS RPKM MEDIPS
2.9 years ago enrique.yeh • 10 • updated 2.9 years ago Lukas Chavez • 550
0
Votes
6
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867
Views
MeDIPS: warning when using "ttest" settings in MEDIPS.meth
R medips medip-seq
4.4 years ago • updated 3.6 years ago stb • 0
3
Votes
5
Replies
612
Views
CNV parameter not working - MEDIPS
medips medip-seq error lukas
3.7 years ago anupriyaverma1408 • 0 • updated 3.7 years ago Matthias Lienhard • 140
1
Vote
1
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595
Views
Window size for MEDIPS
medips medip-seq peak finding luckas
3.7 years ago anupriyaverma1408 • 0 • updated 3.7 years ago Lukas Chavez • 550
0
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2
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900
Views
MeQA and MEDIPS
bioconductor meqa medips
4.7 years ago manish.kumar • 0 • updated 3.7 years ago palchamy • 0
0
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1
Reply
461
Views
How does the function MEDIPS.CpGenrich work?
medips
3.7 years ago stb • 0 • updated 3.7 years ago Lukas Chavez • 550
0
Votes
1
Reply
666
Views
Error raised during execution of MEDIPS package
medips
3.9 years ago pinky_pinkpinky • 0 • updated 3.9 years ago Lukas Chavez • 550
0
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1
Reply
535
Views
MEDIPS: case study with different replicate numbers of control and case
MEDIPS
4.0 years ago fmhsu0114 • 0 • updated 4.0 years ago Lukas Chavez • 550
0
Votes
1
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484
Views
Insertion size when using 'paired' in MEDIPS.createSet()
medips R medip-seq pair-end reads
4.1 years ago stb • 0 • updated 4.1 years ago Lukas Chavez • 550
0
Votes
1
Reply
552
Views
How to make my custom genome available in MEDIPS?
MEDIPS
4.2 years ago Vijay Lakhujani • 0
0
Votes
1
Reply
607
Views
similar problem installing MEDIPS on Ubuntu 14.04
installation medips
4.2 years ago avilella • 10
0
Votes
1
Reply
615
Views
MEDIPS - do reads without CG's get filtered out prior to analysis?
medips
4.3 years ago chu_shirley • 0 • updated 4.3 years ago Lukas Chavez • 550
0
Votes
1
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483
Views
How does the 'paired' argument works in MeDIPS 1.23.2
medips medip-seq R pair-end reads
4.3 years ago stb • 0 • updated 4.3 years ago Lukas Chavez • 550
0
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1
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596
Views
Gene Symbol Annotation
medips
4.4 years ago peter.mcerlean • 0 • updated 4.4 years ago Lukas Chavez • 550
0
Votes
1
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447
Views
TMM Normalization within MEDIPS ups some zero counts, is this normal?
MEDIPS
4.5 years ago jenniferlneary • 0 • updated 4.5 years ago Lukas Chavez • 550
1
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1
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641
Views
MeDIPS and use of the 'bwa' parameter
R medip-seq medips bwa
4.5 years ago stb • 0 • updated 4.5 years ago Lukas Chavez • 550
1
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6
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476
Views
Alternative methylation contexts with MEDIPS?
MEDIPS
4.5 years ago Chris Fields • 60 • updated 4.5 years ago Matthias Lienhard • 140
0
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6
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656
Views
MEDIPS - input
MEDIPS input
4.6 years ago GFM • 20
0
Votes
1
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636
Views
Questions for MEDIPS getPairedGRange function in MEDIPS.readRegionsFile.R
medips bam file
4.6 years ago fkuo • 10
0
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6
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966
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MEDIPS: Number of windows tested in Paired-end data set
medips r
4.8 years ago peter.mcerlean • 0
0
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5
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753
Views
MEDIPS genome Vs createROIset significance issue
medips r
4.9 years ago peter.mcerlean • 0
0
Votes
1
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966
Views
Error in MEDIPS.calibrationCurve looking for different methylation profiles
medips R
5.0 years ago pertille • 0 • updated 4.9 years ago Lukas Chavez • 550
0
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1
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668
Views
How to do FDR p.adj manually on "mr.edgeR object" from MEDIPS package?
R Medips edgeR
5.0 years ago pertille • 0 • updated 5.0 years ago Lukas Chavez • 550
2
Votes
1
Reply
634
Views
How createSet from reduced "paire-ed" sequencing on MeDIPS?
medips R input files
5.0 years ago pertille • 0 • updated 5.0 years ago Lukas Chavez • 550
0
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1
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654
Views
MEDIPS stable version problem
MEDIPS
5.1 years ago chengyuanzhi1986 • 0 • updated 5.0 years ago Lukas Chavez • 550
2
Votes
2
Replies
782
Views
Normalizing Depth Coverage between samples MEDIPS
normalization medips depth edgeR "R"
5.2 years ago pertille • 0 • updated 5.2 years ago Aaron Lun ♦ 26k
2
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13
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1.2k
Views
Error with MEDIPS.createSet in queryHits
medips createset
5.2 years ago Vanilla • 0
0
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2
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631
Views
New to R: How to use your own data for Bioconductor Packages
MEDIPS rsamtools
5.4 years ago hseepany • 0 • updated 5.4 years ago Dan Tenenbaum ♦ 8.2k
0
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1
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544
Views
MEDIPS test data lack of 4 files
medips
5.5 years ago yanzhangusa • 0 • updated 5.5 years ago Lukas Chavez • 550
1
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2
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1.3k
Views
MEDIPS vs MACS: why does MEDIPS generate more conservative p-values
p-value medips MACS
5.6 years ago tptacek3050 • 0 • updated 5.6 years ago Lukas Chavez • 550
0
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2
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622
Views
MEDIPS: Any way to get more columns/data from MEDIPS.mergeFrames?
MEDIPS mergeFrames
5.7 years ago tptacek3050 • 0 • updated 5.7 years ago Lukas Chavez • 550
1
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2
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867
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MEDIPS - RPKM
MEDIPS
5.8 years ago malbert1 • 0
0
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1
Reply
722
Views
MEDIPS : Populating fragments from Paired End reads
medips
5.8 years ago kuldeep5534 • 0 • updated 5.8 years ago Lukas Chavez • 550
94 results • Page 1 of 2
Recent ...
Replies
Comment: DESeq2 and shrinkage of log2 fold changes by Michael Love 31k
What do you mean that the set with FDR bound increases? Shrinkage methods in current