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msnbase
•
reset
0
Votes
0
Replies
43
Views
Which package I can use?
MSnbase
DAPAR
DEP
9 weeks ago
yueli7
• 10
1
Vote
1
Reply
83
Views
Missing SCANS in writeMgfData
MSnbase
10 weeks ago
Pedro Baldoni
• 0
• updated 10 weeks ago
Laurent Gatto
1.4k
0
Votes
4
Replies
171
Views
Error with xcms - requiring MSnbase 2.15.3 but not installing
software error
xcms
MSnbase
4 months ago
kramerl
• 0
• updated 4 months ago
Laurent Gatto
1.4k
3
Votes
2
Replies
71
Views
readMSData and netCDF files, only TIC intensity available
MSnbase
netCDF
7 months ago
julien.kermorvant
• 20
6
Votes
7
Replies
123
Views
readMSData and netCDF files, how to set polarity ?
MSnbase
7 months ago
julien.kermorvant
• 20
• updated 7 months ago
Johannes Rainer
♦ 1.7k
2
Votes
1
Reply
88
Views
Maximum parsimony protein assembly/inference
rforproteomics
proteomics
msnid
msnbase
9 months ago
daniel.magnus.bader
• 40
3
Votes
4
Replies
92
Views
Ion Mass to Charge Search R Function with MSnbase, Data frame as mass to charge input help
MSnbase
plyr
11 months ago
djshipman2011
• 10
• updated 11 months ago
Laurent Gatto
1.4k
0
Votes
5
Replies
156
Views
runInfo returns startTimeStamp -infinity
lcms
mzR
metabolomics
xcms
MSnbase
16 months ago
pol.soladelossantos
• 0
• updated 16 months ago
Laurent Gatto
1.4k
0
Votes
8
Replies
954
Views
Getting data into (and out of) the MSnSet object
proteomics
MSnbase
MSnSet
readMSnSet
msmsTests
3.0 years ago
moldach
• 20
• updated 17 months ago
sutturka
• 0
4
Votes
4
Replies
192
Views
Extracting Data from MSn experiment data ("OnDiskMSnExp")
MSnbase
17 months ago
jamesrgraham
• 20
• updated 17 months ago
Laurent Gatto
1.4k
3
Votes
2
Replies
169
Views
Access list of rtime/intensity values from chromatograms object from MSnbase
MSnbase
chromatograms
intensity
17 months ago
djshipman2011
• 10
• updated 17 months ago
Laurent Gatto
1.4k
0
Votes
5
Replies
212
Views
MSnbase addIdentificationData problem
software error
MSnbase
19 months ago
jd690764
• 0
• updated 19 months ago
Laurent Gatto
1.4k
2
Votes
3
Replies
158
Views
MSnbase extracting individual spectrum based on precursor ion m/z
MSnbase
19 months ago
garfield320
• 30
• updated 19 months ago
Laurent Gatto
1.4k
0
Votes
4
Replies
814
Views
Error when loading MSnbase package "object 'vI' not found"
msnbase
xcms
pheatmap
22 months ago
lmg
• 0
0
Votes
6
Replies
320
Views
Protein quantification by MSnbase package
msnbase
rforproteomics
23 months ago
fgol
• 10
4
Votes
5
Replies
352
Views
How to convert a xlsx data file to MSnSet format?
msnbase
msmstests
proteomics
lc-ms/ms
msnID
23 months ago
fgol
• 10
• updated 23 months ago
Laurent Gatto
1.4k
0
Votes
3
Replies
458
Views
MSnbase package, Error in downloading data file "PXD000001" from PRIDE Repository by pxget function
MSnbase
Bioconductor
PRIDE
rpx
PXDataset
24 months ago
fgol
• 10
• updated 24 months ago
Laurent Gatto
1.4k
0
Votes
4
Replies
248
Views
MSnset combine error message
MSnbase
2.0 years ago
kamal.fartiyal84
• 10
0
Votes
5
Replies
1.0k
Views
Errors installing RforProteomics and MSnbase packages
RforProteomics
MSnbase
2.0 years ago
fgol
• 10
• updated 2.0 years ago
Laurent Gatto
1.4k
3
Votes
2
Replies
310
Views
MSnbase annotate m/z values on mass spectrum plots
msnbase
2.1 years ago
garfield320
• 30
• updated 2.1 years ago
Laurent Gatto
1.4k
1
Vote
2
Replies
269
Views
quantify() method for MSnExp to MSnSet for MS1 level data only
msnbase
spectrum
2.3 years ago
dgemoets
• 0
• updated 2.3 years ago
Laurent Gatto
1.4k
3
Votes
1
Reply
326
Views
Does OnDiskMSnExp rewrite original data
xcms
msnbase
ondiskmsnexp
2.4 years ago
goh
• 0
• updated 2.4 years ago
Laurent Gatto
1.4k
1
Vote
2
Replies
386
Views
Label free quantification post FDR calculation for MS/MS Proteomics
mzid
msnbase
mzr
2.7 years ago
jspmccain
• 10
• updated 2.7 years ago
Laurent Gatto
1.4k
0
Votes
2
Replies
313
Views
How to manipulate assayData in MSnSetList
msnbase
2.8 years ago
kamal.fartiyal84
• 10
2
Votes
4
Replies
442
Views
calling combineFeatures twice causes duplicate row.names
msnbase
duplicate
rforproteomics
3.0 years ago
joris.vanhoutven
• 0
• updated 3.0 years ago
Laurent Gatto
1.4k
0
Votes
6
Replies
726
Views
Combining two MSnSet
msnbase
3.3 years ago • updated 3.0 years ago
kamal.fartiyal84
• 10
0
Votes
1
Reply
360
Views
Adding Identification Data to MSnbase MSn Experiment
MSnbase
3.3 years ago
lau1
• 0
0
Votes
4
Replies
885
Views
Missing value imputation
msnbase
3.5 years ago
kamal.fartiyal84
• 10
0
Votes
14
Replies
1.1k
Views
Pbase: AddIdentificationData. How can I use MSnId objects (filtered psm) to build the Proteins database
pbase
MsnId
mzid
msnbase
4.9 years ago
viswanathan.raghuram
• 0
• updated 4.9 years ago
Sebastian Gibb
• 80
0
Votes
2
Replies
3.4k
Views
Error: package or namespace load failed for ‘MSnbase’
MSnbase
4.9 years ago
Marie
• 0
• updated 4.9 years ago
Laurent Gatto
1.4k
4
Votes
15
Replies
1.4k
Views
Converting Synapter object output into a MSnbase-compatible object
synapter
msnbase
5.4 years ago • updated 5.3 years ago
diana.schreier
• 0
1
Vote
9
Replies
1.3k
Views
msnbase error when adding identification data
msnbase
proteomics
itraq
6.0 years ago
queso012
• 0
• updated 6.0 years ago
Laurent Gatto
1.4k
32 results • Page
1 of 1
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Replies
Comment: DESeq2 Error: ncol(countData) == nrow(colData) is not TRUE
by
Pedram
• 0
Hello Michael I could not make the same matrix although I did what you said
Comment: Replace a specific nucleotide sequence, at a specific position, with another in
by
Konstantinos Yeles
• 40
Hello @Benjamin-24571 for your example, I can suggest you this code: Read <- c("1","2","3","4") Sequences <- c("ACACCCACG", "AA…
Comment: CHIP Seq Analysis by DiffBind Package
by
shrinka.genetics
• 0
Hello Thanks for your reply. I changed my file format and now it ran. It gave one plot also. All file s are in same directory. No…
Answer: Installing Bioconductor packages in Docker
by
Konstantinos Yeles
• 40
Hello, @adklts-21974 My way to do the installation of packages in a docker is like this: FROM bioconductor/bioconductor_docker…
Comment: HTqPCR: dealing with technical replicates (filterCategory) and inability to anal
by
larissa.stanberry
• 0
I ran into the same issue. It appears that filtering does not carry over featureData with the exception of featureNames, e.g. call featureD…
Votes
A: single-cells RNA-seq analysis by MAST with unbalanced group size
single-cells RNA-seq analysis by MAST with unbalanced group size
A: single-cells RNA-seq analysis by MAST with unbalanced group size
A: DESeq2 1.20.0 lfcshrink function
DEXSeq Usage and Expression Confusion
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