Showing : opencyto • reset
0
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2
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61
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openCyto Problem: Registered Gating Function Executes Twice when Called
openCyto register_plugins gs_add_gating_method
7 months ago geoffreylewen • 0
0
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1
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61
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FlowCore openCyto: problem with summary(result)
flowCore openCyto Summary Result Filter
9 months ago noviello • 0 • updated 8 months ago Jake Wagner • 280
3
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3
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87
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Adding quadGate.tmix to gating set with gs_pop_add
gs_pop_add quadGate openCyto
8 months ago alavy • 10 • updated 8 months ago Jake Wagner • 280
4
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5
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122
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Calculate F measure to compare different gating approaches for a specific cell population
flowWorkspace flowCore openCyto flowFrame F-measure
9 months ago stefankolling+github • 0 • updated 9 months ago Jake Wagner • 280
1
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5
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271
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custom gatingMethod not functioning / registering as expected (openCyto) (minDensity)
openCyto registerPlugin gatingMethod minDensity
17 months ago k.teijgeler • 0
5
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11
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385
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polyFunctions gate in OpenCyto 1.20
opencyto polyfunctions polyfunctionsGate
20 months ago k.teijgeler • 0 • updated 20 months ago Jiang, Mike ♦ 1.3k
0
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6
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406
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How to select left hand side of mindensity2 gate
openCyto mindensity
23 months ago biomiha • 20 • updated 23 months ago Jiang, Mike ♦ 1.3k
0
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7
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322
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RefGate populations switched in OpenCyto 1.20
RefGate OpenCyto
2.1 years ago k.teijgeler • 0 • updated 24 months ago Jiang, Mike ♦ 1.3k
3
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3
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662
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Opencyto - detector name not found in flow data, but pretty sure it's there
opencyto flowcore flow cytometry
3.3 years ago Andrew Box • 10 • updated 2.3 years ago Jiang, Mike ♦ 1.3k
0
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4
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1.3k
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Windows 10 openCyto Install: installation path not writeable, unable to update packages: boot, Matrix, mgcv
bioclite openCyto package installation
3.3 years ago Robert Baer • 70 • updated 2.9 years ago Jiang, Mike ♦ 1.3k
0
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6
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578
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opencyto Error in .validity_check_alias
opencyto
3.3 years ago biomiha • 20 • updated 3.3 years ago Jiang, Mike ♦ 1.3k
2
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5
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901
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How to find Geometric Mean from gated Quantibeads
flowworkspace opencyto
3.5 years ago justinyi10 • 10 • updated 3.5 years ago Jiang, Mike ♦ 1.3k
1
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5
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871
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Measure Median Fluorescence Intensity in openCyto
opencyto
3.5 years ago justinyi10 • 10 • updated 3.5 years ago Jiang, Mike ♦ 1.3k
0
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1
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381
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Fail to load openCyto
opencyto bioconductor
3.5 years ago justinyi10 • 10 • updated 3.5 years ago Martin Morgan 25k
0
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1
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1.5k
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R Session Aborted; R ecountered a fatal error while loading openCyto
opencyto fatal error library
3.6 years ago Maria • 0 • updated 3.6 years ago Jiang, Mike ♦ 1.3k
1
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1
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513
Views
Add flowclust gate to gatingset
opencyto flowclust
3.6 years ago pavitrarc • 20 • updated 3.6 years ago Jiang, Mike ♦ 1.3k
2
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1
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507
Views
openCyto displaying gating panels
opencyto
4.0 years ago Rivka • 0 • updated 4.0 years ago Jiang, Mike ♦ 1.3k
2
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1
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464
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openCyto working Example: expects {flowWorkspace} but example
opencyto bioconductor opencyto gating
4.0 years ago Rivka • 0 • updated 4.0 years ago Jiang, Mike ♦ 1.3k
2
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4
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544
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Parsing flowWorkspace data
opencyto R flowworkspace bioconductor
4.1 years ago Rivka • 0 • updated 4.1 years ago Jiang, Mike ♦ 1.3k
1
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4
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651
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openCyto trouble importing xml file
opencyto bioconductor R
4.1 years ago Rivka • 0
0
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1
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622
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using flowIncubator package's function
opencyto flow cytometry R package installation
4.5 years ago anara92 • 0 • updated 4.5 years ago Jiang, Mike ♦ 1.3k
1
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5
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894
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openCyto - flowclust.2d throws errors
opencyto flow cytometry
4.7 years ago Ulrik Stervbo • 30 • updated 4.7 years ago bmuchmore • 0
0
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1
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1.1k
Views
reading an ".xml" file as FlowJo Workspace file
opencyto gating opencyto flowcore flowworkspace
4.7 years ago anara92 • 0 • updated 4.7 years ago Jiang, Mike ♦ 1.3k
1
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3
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581
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OpenCyto - getting gate coordinates
opencyto
4.7 years ago Ulrik Stervbo • 30
2
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1
Reply
923
Views
Trouble parsing a workspace in flowWorkspace
flowworkspace opencyto
4.8 years ago wir.traumen • 10 • updated 4.8 years ago lovetatting • 10
0
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1
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918
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FlowWorkspace and norm2Filter
flowcytometry opencyto flowworkspace flowcore
4.9 years ago Jiang, Mike ♦ 1.3k
1
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2
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582
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openCyto - samples with low cell counts
flowcytometry opencyto
5.0 years ago Jiang, Mike ♦ 1.3k
0
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3
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1.2k
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openCyto: compilation failure during installation
opencyto rhdf5 compilation error
5.1 years ago • updated 5.0 years ago gmirkin • 0
1
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9
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1.6k
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Problem with ggcyto/flowWorkspace from GitHub
software error flowworkspace opencyto
5.1 years ago • updated 5.0 years ago anders.tondell • 30
4
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8
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1.5k
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openCyto: usage and visualization of quadGate.tmix / collapsing data for flowClust
flowclust opencyto opencyto gating
5.2 years ago Viktor Thiel • 0 • updated 5.1 years ago Greg Finak • 240
0
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5
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1.1k
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openCyto fails to load
opencyto bioclite
5.2 years ago pavitrarc • 20 • updated 5.2 years ago yang.chen • 0
0
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4
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887
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Issues parsing workspace in openCyto
opencyto
5.5 years ago JK • 10
0
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0
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799
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openCyto transitional gate
flow cytometry opencyto
5.8 years ago Jiang, Mike ♦ 1.3k
0
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0
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776
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Re: FlowStats help
flowclust opencyto flowcytometry
5.9 years ago Jiang, Mike ♦ 1.3k
5
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4
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2.0k
Views
openCyto: Using combination gates (boolean gates)
opencyto opencyto gating FlowJo
6.0 years ago juancamilos • 10 • updated 6.0 years ago Greg Finak • 150
4
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1
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991
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News: New Flow Cytometry Data Analysis Framework
flowcore flowcytometry opencyto new News
6.3 years ago Greg Finak • 150
1
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0
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1.1k
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Issue with flowDensity on OpenCyto
flowClust openCyto flowDensity flowClust openCyto flowDensity
6.4 years ago Jiang, Mike ♦ 1.3k
0
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1
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953
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OpenCyto
Cancer eisa openCyto Cancer eisa openCyto
6.6 years ago Jiang, Mike ♦ 1.3k
0
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0
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506
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Bioconductor Digest, Vol 134, Issue 10
openCyto flowDensity openCyto flowDensity
6.8 years ago Jiang, Mike ♦ 1.3k
39 results • Page 1 of 1
Recent ...
Replies
Comment: DESeq2 Error: ncol(countData) == nrow(colData) is not TRUE by Pedram • 0
Hello Michael I could not make the same matrix although I did what you said
Comment: Replace a specific nucleotide sequence, at a specific position, with another in by Konstantinos Yeles • 40
Hello @Benjamin-24571 for your example, I can suggest you this code: Read <- c("1","2","3","4") Sequences <- c("ACACCCACG", "AA…
Comment: CHIP Seq Analysis by DiffBind Package by shrinka.genetics • 0
Hello Thanks for your reply. I changed my file format and now it ran. It gave one plot also. All file s are in same directory. No…
Answer: Installing Bioconductor packages in Docker by Konstantinos Yeles • 40
Hello, @adklts-21974 My way to do the installation of packages in a docker is like this: FROM bioconductor/bioconductor_docker…
Comment: HTqPCR: dealing with technical replicates (filterCategory) and inability to anal by larissa.stanberry • 0
I ran into the same issue. It appears that filtering does not carry over featureData with the exception of featureNames, e.g. call featureD…
Votes
A: single-cells RNA-seq analysis by MAST with unbalanced group size
single-cells RNA-seq analysis by MAST with unbalanced group size
A: single-cells RNA-seq analysis by MAST with unbalanced group size
A: DESeq2 1.20.0 lfcshrink function
DEXSeq Usage and Expression Confusion
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