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pheatmap
•
reset
0
Votes
2
Replies
78
Views
Add selected row names on pheatmap
R
pheatmap
6 weeks ago
ecg1g15
• 0
• updated 6 weeks ago
ATpoint
• 390
0
Votes
2
Replies
276
Views
plotPCA with DESeq2 results in unable to find an inherited method for function plotPCA for signature matrix Error
deseq2
pheatmap
RColorBrewer
BiocGenerics
7 months ago
matthewzli777
• 0
• updated 7 months ago
Michael Love
31k
0
Votes
4
Replies
395
Views
pheatmap for DEGs
normalization
pheatmap
9 months ago
Hamidreza Hashemi
• 20
• updated 9 months ago
Kevin Blighe
2.3k
5
Votes
11
Replies
153
Views
Heatmap only including DE genes?
heatmap
coolmap
pheatmap
9 months ago
Raito92
• 40
• updated 9 months ago
Gordon Smyth
41k
0
Votes
1
Reply
1.2k
Views
Reordering clusters when plotting pheatmap in R
R
pheatmap
clusters
18 months ago
ecg1g15
• 0
0
Votes
4
Replies
814
Views
Error when loading MSnbase package "object 'vI' not found"
msnbase
xcms
pheatmap
22 months ago
lmg
• 0
0
Votes
6
Replies
347
Views
stringasfactor = F changes the output of pheatmap, why?
deseq2
pheatmap
23 months ago
bdy8
• 0
• updated 23 months ago
Wolfgang Huber
13k
0
Votes
2
Replies
357
Views
Averaging over biological replicates with DESeq2 for heatmap plotting
deseq2
pheatmap
average
2.3 years ago
chighfi
• 0
• updated 2.3 years ago
James W. MacDonald
55k
2
Votes
1
Reply
1.5k
Views
deseq 2x2: highly variable genes are not among differentially expressed gene
deseq2
rld
pheatmap
dds
5.3 years ago
rahel14350
• 10
• updated 3.2 years ago
Michael Love
31k
4
Votes
8
Replies
5.5k
Views
Scaling genes to have unit variance for clustering / heatmaps with DESeq2
deseq2
heatmap.2
bicluster
pheatmap
5.4 years ago
tj.hu
• 10
• updated 3.2 years ago
Michael Love
31k
0
Votes
0
Replies
1.8k
Views
pheatmap - Error in do_one(nmeth) : NA/NaN/Inf in foreign function call (arg 1)
pheatmap
kmeans
3.3 years ago
Assa Yeroslaviz
♦ 1.5k
1
Vote
1
Reply
6.4k
Views
Pheatmap clustering and row annotation
R
pheatmap
cutree
3.3 years ago
meseretbrihanu
• 10
0
Votes
1
Reply
1.2k
Views
Unsupervised heatmap use tpm or rlog gave different results
deseq2
tpm
heatmap
pheatmap
3.6 years ago
jarod_v6@libero.it
• 40
• updated 3.6 years ago
Michael Love
31k
0
Votes
1
Reply
1.1k
Views
How to extract the distrances of the column dendrogram from pheatmap and just plot them with the distance scale?
pheatmap
hclust
R
dendrogram
3.7 years ago
vd4mmind
• 0
0
Votes
1
Reply
487
Views
How to solve out the misunstanding of fake "red" "green" on the heatmap
pheatmap
3.7 years ago
joseph
• 40
• updated 3.7 years ago
Gavin Kelly
• 570
8
Votes
1
Reply
5.4k
Views
extracting the genes associated with the clusters
heatmap.2
pheatmap
complexheatmap
heatplus
3.9 years ago
Bogdan
• 610
• updated 3.9 years ago
Gavin Kelly
• 570
0
Votes
0
Replies
2.9k
Views
Pheatmap: how to use breaks for pheatmap
pheatmap
heatmap
4.2 years ago
jarod_v6@libero.it
• 40
1
Vote
1
Reply
2.9k
Views
adding margins around pheatmap plots
pheatmap
4.4 years ago
stephane.plaisance
• 10
• updated 4.4 years ago
Wolfgang Huber
13k
1
Vote
2
Replies
1.4k
Views
R crash when matrix nrows exceeds 45000 using pheatmap/heatmap.2
pheatmap
heatmap.2
4.8 years ago
John
• 30
0
Votes
2
Replies
926
Views
Unsupervised analysis problems
pheatmap
unsupervised
4.9 years ago
jarod_v6@libero.it
• 40
• updated 4.9 years ago
Michael Love
31k
4
Votes
5
Replies
2.1k
Views
Deseq2 unsupervised analysis (heatmap row scaling or none?)
deseq2
pheatmap
5.0 years ago • updated 4.9 years ago
jarod_v6@libero.it
• 40
4
Votes
9
Replies
4.4k
Views
Upper triangular matrix heatmap using pheatmap package
pheatmap
5.1 years ago
Deepak Tanwar
• 10
1
Vote
0
Replies
1.6k
Views
heatmap.2() making columns narrower to make them look like microarray?
heatmap.2
pheatmap
5.3 years ago
AJC
• 10
23 results • Page
1 of 1
Recent ...
Replies
Comment: DESeq2 Error: ncol(countData) == nrow(colData) is not TRUE
by
Pedram
• 0
Hello Michael I could not make the same matrix although I did what you said
Comment: Replace a specific nucleotide sequence, at a specific position, with another in
by
Konstantinos Yeles
• 40
Hello @Benjamin-24571 for your example, I can suggest you this code: Read <- c("1","2","3","4") Sequences <- c("ACACCCACG", "AA…
Comment: CHIP Seq Analysis by DiffBind Package
by
shrinka.genetics
• 0
Hello Thanks for your reply. I changed my file format and now it ran. It gave one plot also. All file s are in same directory. No…
Answer: Installing Bioconductor packages in Docker
by
Konstantinos Yeles
• 40
Hello, @adklts-21974 My way to do the installation of packages in a docker is like this: FROM bioconductor/bioconductor_docker…
Comment: HTqPCR: dealing with technical replicates (filterCategory) and inability to anal
by
larissa.stanberry
• 0
I ran into the same issue. It appears that filtering does not carry over featureData with the exception of featureNames, e.g. call featureD…
Votes
A: single-cells RNA-seq analysis by MAST with unbalanced group size
single-cells RNA-seq analysis by MAST with unbalanced group size
A: single-cells RNA-seq analysis by MAST with unbalanced group size
A: DESeq2 1.20.0 lfcshrink function
DEXSeq Usage and Expression Confusion
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