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MBD-seq qsea BiocParallel

• updated 17 days ago Matthias Lienhard • 140

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777

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illimina 450k methylation qsea MEDIPS TCGA

• updated 5 months ago Matthias Lienhard • 140

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Qsea

• updated 9 months ago Matthias Lienhard • 140

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qsea medips

• updated 11 months ago Matthias Lienhard • 140

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Qsea

• updated 11 months ago Matthias Lienhard • 140

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128

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qsea MBDseq

• updated 17 months ago Matthias Lienhard • 140

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229

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Rsamtools QSEA MEDIPS

2.3 years ago saripalligautam86 • 10

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285

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qsea

• updated 2.6 years ago Matthias Lienhard • 140

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473

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qsea

• updated 2.7 years ago Matthias Lienhard • 140

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qsea

• updated 2.9 years ago Matthias Lienhard • 140

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335

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QSEA

• updated 2.9 years ago Matthias Lienhard • 140

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492

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qsea

• updated 2.9 years ago Matthias Lienhard • 140

12 results • Page 1 of 1

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Answer: The compare result is different in score and Conc in DiffBind by shangguandong1996 • 20

I know in newer DiffBind version, the default of `score` argument is different, So I post a newer DiffBind version result. ``` library(…

Answer: Conc_1 in differnet dba.report result is slightly different by shangguandong1996 • 20

For a newer DiffBind version ``` library(DiffBind) library(BiocParallel) library(dplyr) tamoxifen <- dba(sampleSheet="tamoxifen.csv") ta…

Comment: Conc_1 in differnet dba.report result is slightly different by shangguandong1996 • 20

Hi, Dr Stark I just find you fixed the link, and I want to use the test data to reproduce my issue ``` library(DiffBind) library(BiocPara…

Comment: DESeq2 and shrinkage of log2 fold changes by Asier • 0

One question related to this. In the case of using the schrinkage (in my dataset of miRNA-seq) the number of SDE miRNAs (FDR) increases wit…

Comment: [Limma] Correcting Dye swap effect by MatthewP • 0

Hello, Can you explain "M vs M plot" with more details? I have include dye-effect in limma design model, and got very few probes differenti…

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A: Performing differential gene analysis on RT PCR experimental data

Comment: DESeq2: Significant padj and LFC in a 0 vs. 20 counts comparison?

A: Using the plotting functions of clusterProfiler / enrichplot with enrichment res

Comment: DESeq2: Significant padj and LFC in a 0 vs. 20 counts comparison?

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