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rnbeads
•
reset
2
Votes
6
Replies
151
Views
Installation of RnBeads package fails on Ubuntu 18.04.5 LTS
RnBeads
7 weeks ago • updated 6 weeks ago
vi.hammer
• 0
2
Votes
1
Reply
81
Views
RnBeads::combine() - error?
RnBeads
Rnbeads2.0
RnBeads2
7 months ago
D
• 0
• updated 7 months ago
mscherer
• 40
0
Votes
0
Replies
45
Views
Is rnb.execute.import() has a bug in reading bismarkCytosine formart bed file? coordinates seem to be shifted by 1
RnBeads
9 months ago
caoy4g4
• 0
0
Votes
2
Replies
260
Views
RnBeads set ghost script environment variable
RnBeads
ghostscript
14 months ago
Kathrin.Klee
• 0
1
Vote
3
Replies
189
Views
Obtaining annotated results from rnbeads
rnbeads
EPIC
19 months ago
Mark Dunning
♦ 1.1k
• updated 19 months ago
mscherer
• 40
0
Votes
3
Replies
232
Views
Trouble creating an RnBeads annotation for rn6 rat genome build
RnBeads
rn6
RnBeadsAnnotationCreator
23 months ago
richardjacton
• 0
• updated 23 months ago
mscherer
• 40
0
Votes
1
Reply
457
Views
RnBeads "The analysis directory does not contain RnBSet objects"
rnbeads
2.7 years ago
neuro3030
• 0
0
Votes
1
Reply
552
Views
RnBeads data preprocessing error
RnBeads
3.2 years ago
Clyndas
• 0
• updated 2.8 years ago
mlyall
• 0
0
Votes
0
Replies
378
Views
differential methylation analysis with RnBeads
rnbeads
methylation
methylationepic
dna methylation
2.9 years ago
gabrielrfries
• 0
1
Vote
1
Reply
549
Views
Error in Rnbeads:Error in logger.error(em) : Could not create file. cannot popen '/usr/bin/which 'gs' 2>/dev/null', probable reason 'Cannot alloca…
R
bioconductor
rnbeads
microarray
illimina 450k methylation
3.2 years ago
preethibagopi28
• 10
0
Votes
0
Replies
434
Views
Is it possible to use Rnbeads with WGBS data from epigenetics roadmap/ucsc data
rnbeads
wgbs
3.4 years ago
theodore.georgomanolis
• 0
0
Votes
2
Replies
984
Views
how to do noob+funnorm+bmiq normalization together in minfi or RnBeads?
minfi
RnBeads
noob
preprocessFunnorm
BMIQ
3.8 years ago
rahel14350
• 10
• updated 3.8 years ago
Kasper Daniel Hansen
6.5k
0
Votes
0
Replies
521
Views
'type = genes' for RnBeads::meth() function
rnbeads
4.0 years ago
Tom
• 10
0
Votes
0
Replies
668
Views
Importing Infinium data files using RnBeads::rnb.execute.import()
RnBeads
4.1 years ago
Habil Zare
• 170
0
Votes
0
Replies
555
Views
RnBeads, enrichment analysis
rnbeads
4.2 years ago
gaiusjaugustus
• 0
0
Votes
0
Replies
671
Views
Issue with finding .idat files when analysing illumina methylation microarrays using RnBeads
rnbeads
methylation
illumina
epic microarray
4.4 years ago
rasii
• 0
4
Votes
4
Replies
1.5k
Views
How to remove unwanted probes before normalization in 450k data
minfi
450k
champ
rnbeads
4.9 years ago
AST
• 50
• updated 4.8 years ago
James W. MacDonald
55k
0
Votes
2
Replies
1.4k
Views
error nonzero exit
illuminahumanmethylation450k.db
rnbeads
5.4 years ago
caroline.gluck
• 0
• updated 4.9 years ago
katwre
• 0
0
Votes
2
Replies
627
Views
RnBeads - save state between data crunching and report generation checkpoints within the differential methylation module?
rnbeads
xserver
headless-r
x11
4.9 years ago
areyoujokingme
• 0
0
Votes
0
Replies
1.3k
Views
RnBeads check.names error:: "formal argument "check.names" matched by multiple actual arguments"
rnbeads
software error
5.1 years ago
areyoujokingme
• 0
2
Votes
7
Replies
1.2k
Views
ggbio, RnBeads and 3.2.2
ggbio
rnbeads
rversion3.2.2
5.1 years ago
areyoujokingme
• 0
0
Votes
1
Reply
831
Views
RnBeads - test statistics for rnb.run.differential
RnBeads
5.2 years ago
Brian Smith
• 120
• updated 5.2 years ago
rnbeads
• 0
0
Votes
1
Reply
606
Views
RnBeads and technical replicates in differential analysis
rnbeads
replicates
5.2 years ago
Jon Manning
• 40
• updated 5.2 years ago
rnbeads
• 0
0
Votes
2
Replies
1.1k
Views
RnBeads - error with 'rnb.run.differential' module
RnBeads
illimina 450k methylation
5.2 years ago
Brian Smith
• 120
1
Vote
9
Replies
1.2k
Views
RnBeads fails with error in version 1.2 with GRanges v1.22.0
RnBeads
5.2 years ago
berger
• 0
• updated 5.2 years ago
rnbeads
• 0
1
Vote
1
Reply
1.2k
Views
RnBeads - doesn't produce pdfs
rnbeads
illumina450k
5.2 years ago
Brian Smith
• 120
• updated 5.2 years ago
pavlo.lutsik
• 10
0
Votes
2
Replies
800
Views
rnBeads error for the report path
software error
rnbeads
5.3 years ago
brenna.hott
• 0
• updated 5.3 years ago
Dan Tenenbaum
♦ 8.2k
0
Votes
1
Reply
1.0k
Views
RnBeads: Error in as.list.default(data.source) : no method for coercing this S4 class to a vector
rnbeads
error
as.vector(data)
s4vectors
s4
5.4 years ago
schasse
• 0
0
Votes
3
Replies
2.2k
Views
RnBeads cannot locate libjasper.so.1
rnbeads
gs
ghostscript
shared libraries
cluster
5.5 years ago
bmreilly
• 0
2
Votes
4
Replies
1.3k
Views
Package RnBeads not available for R 3.1.2?
RnBeads
packages
R 3.1.2
5.5 years ago
bmreilly
• 0
30 results • Page
1 of 1
Recent ...
Replies
Comment: Replace a specific nucleotide sequence, at a specific position, with another in
by
Konstantinos Yeles
• 40
Hello @Benjamin-24571 for your example, I can suggest you this code: Read <- c("1","2","3","4") Sequences <- c("ACACCCACG", "AA…
Comment: CHIP Seq Analysis by DiffBind Package
by
shrinka.genetics
• 0
Hello Thanks for your reply. I changed my file format and now it ran. It gave one plot also. All file s are in same directory. No…
Answer: Installing Bioconductor packages in Docker
by
Konstantinos Yeles
• 40
Hello, @adklts-21974 My way to do the installation of packages in a docker is like this: FROM bioconductor/bioconductor_docker…
Comment: HTqPCR: dealing with technical replicates (filterCategory) and inability to anal
by
larissa.stanberry
• 0
I ran into the same issue. It appears that filtering does not carry over featureData with the exception of featureNames, e.g. call featureD…
Comment: Design Matrix for DESeq2 or EdgeR
by
Kevin Blighe
2.3k
Cross-posted on Biostars: https://www.biostars.org/p/484823/
Votes
A: single-cells RNA-seq analysis by MAST with unbalanced group size
single-cells RNA-seq analysis by MAST with unbalanced group size
A: single-cells RNA-seq analysis by MAST with unbalanced group size
A: DESeq2 1.20.0 lfcshrink function
DEXSeq Usage and Expression Confusion
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