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roast
•
reset
3
Votes
2
Replies
118
Views
Self-contained gene set testing with DESeq2 results
roast
DESeq2
GeneSetEnrichment
4 weeks ago
prabin.dm
• 0
• updated 4 weeks ago
Gordon Smyth
41k
2
Votes
2
Replies
240
Views
Finding genes in a gene set detected by ROAST (or FRY) in limma
roast
fry
limma
18 months ago
kentfung
• 0
• updated 18 months ago
Gordon Smyth
41k
4
Votes
4
Replies
381
Views
Interpreting mroast results
mroast
limma
roast
2.1 years ago
SB
• 0
1
Vote
4
Replies
404
Views
Do the gene set statistics of the ROAST paper correspond to those implemented in the .roastEffects R function?
limma
roast
statistics
source code
gene set testing
2.4 years ago
Andrea Carenzo
• 0
2
Votes
2
Replies
598
Views
limma roast results not in accordance with barcodeplot
roast
limma
2.7 years ago
b.nota
• 340
3
Votes
2
Replies
664
Views
ROAST after edgeR glmTreat and average RPKM filter
roast
edgeR
glmtreat
4.4 years ago
b.nota
• 340
• updated 4.4 years ago
Aaron Lun
♦ 26k
2
Votes
2
Replies
645
Views
limma roast/mroast with patient-matched pre-/post- treatment
limma
roast
mroast
block
4.5 years ago
barbara.shih
• 0
• updated 4.5 years ago
Ryan C. Thompson
7.6k
2
Votes
2
Replies
597
Views
Running Roast with Gene Symbols of Curated Genes
mroast
roast
gene set
gene set analysis
edgeR
4.6 years ago
lattalic
• 0
• updated 4.6 years ago
James W. MacDonald
55k
0
Votes
3
Replies
730
Views
ROAST using curated gene sets
edgeR
mroast
roast
4.6 years ago
lattalic
• 0
2
Votes
1
Reply
704
Views
limma symbols2indices from gmt files versus rdata files
limma
romer
roast
5.0 years ago
biominer
• 10
• updated 5.0 years ago
Gordon Smyth
41k
6
Votes
10
Replies
1.1k
Views
Possible implementation of roast/mroast for testing common DE patterns across two different experiments
gene set testing
roast
mroast
differential gene expression
bioconductor
5.7 years ago
svlachavas
• 770
3
Votes
4
Replies
1.4k
Views
edgeR: no replicates & mroast
edger
roast
6.2 years ago
Daniel
• 10
• updated 6.2 years ago
Gordon Smyth
41k
4
Votes
6
Replies
2.5k
Views
limma roast syntax and interpretation
limma
roast
6.2 years ago
Juliet Hannah
• 360
• updated 6.2 years ago
Gordon Smyth
41k
13 results • Page
1 of 1
Recent ...
Replies
Comment: DESeq2 Error: ncol(countData) == nrow(colData) is not TRUE
by
Pedram
• 0
Hello Michael I could not make the same matrix although I did what you said
Comment: Replace a specific nucleotide sequence, at a specific position, with another in
by
Konstantinos Yeles
• 40
Hello @Benjamin-24571 for your example, I can suggest you this code: Read <- c("1","2","3","4") Sequences <- c("ACACCCACG", "AA…
Comment: CHIP Seq Analysis by DiffBind Package
by
shrinka.genetics
• 0
Hello Thanks for your reply. I changed my file format and now it ran. It gave one plot also. All file s are in same directory. No…
Answer: Installing Bioconductor packages in Docker
by
Konstantinos Yeles
• 40
Hello, @adklts-21974 My way to do the installation of packages in a docker is like this: FROM bioconductor/bioconductor_docker…
Comment: HTqPCR: dealing with technical replicates (filterCategory) and inability to anal
by
larissa.stanberry
• 0
I ran into the same issue. It appears that filtering does not carry over featureData with the exception of featureNames, e.g. call featureD…
Votes
A: single-cells RNA-seq analysis by MAST with unbalanced group size
single-cells RNA-seq analysis by MAST with unbalanced group size
A: single-cells RNA-seq analysis by MAST with unbalanced group size
A: DESeq2 1.20.0 lfcshrink function
DEXSeq Usage and Expression Confusion
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Sophie Marion de Proce
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jol.espinoz
• 30
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• 30
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jma1991
• 40
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EMBL Heidelberg / de.NBI,
6 minutes ago
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