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ruvnormalize
•
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0
Votes
1
Reply
191
Views
Is RUVnormalize applicable to small dataset?
RUVnormalize
protein mi
2.2 years ago
losik
• 0
0
Votes
2
Replies
383
Views
RUVnormalize- How to output a corrected expression matrix without negative values to use for DEG analysis(i.e. limma) ?
RUVnormalize
limma
corrected expression matrix
microarray
3.0 years ago
massimo.acquaviva.78
• 0
• updated 3.0 years ago
Dario Strbenac
♦ 1.5k
2
Votes
9
Replies
1.2k
Views
Zero inflation in RUV normalization and DE for single cell data
ruv
ruvseq
ruvnormalize
single-cell
zero-inflated
3.4 years ago
Nik Tuzov
• 70
• updated 3.4 years ago
davide risso
• 850
1
Vote
3
Replies
1.0k
Views
Does it make sense to consider RUVr normalization for single cell RNA analysis?
RUV
ruvseq
ruvr
ruvnormalize
single cell
3.5 years ago
Nik Tuzov
• 70
2
Votes
1
Reply
658
Views
Decide normalisation method in RUVseq for RNAseq data
edger
ruvseq
rnaseq
normalization
ruvnormalize
3.6 years ago
manish20072013
• 0
• updated 3.6 years ago
davide risso
• 850
2
Votes
1
Reply
717
Views
RUVSeq empirical negative controls? how many to take to find the span set
ruvseq
RUV
ruvnormalize
ruvg
4.5 years ago
anthonycolombo60
• 0
2
Votes
6
Replies
688
Views
effect of polyploidy level on RUVs normalisation
normalization
ruvseq
ruvnormalize
ruvs eda
4.7 years ago
thomas.wolfe
• 0
0
Votes
0
Replies
754
Views
Technical Replicates and RUVs Normalisation
rnaseq
ruvnormalize
normalization
technical replicates
5.1 years ago
thomas.wolfe
• 0
1
Vote
1
Reply
659
Views
RUVnormalize- should input be pre-normalized?
ruvnormalize
microarray
normalization
5.6 years ago
Cornwell, Adam
• 110
• updated 5.5 years ago
laurent.jacob
• 10
2
Votes
1
Reply
724
Views
naiveRandRUV Error When k is 1
RUVNormalize
Subsetting
5.6 years ago
Dario Strbenac
♦ 1.5k
• updated 5.5 years ago
laurent.jacob
• 10
10 results • Page
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Comment: Conc_1 in differnet dba.report result is slightly different
by
shangguandong1996
• 20
I use `as_tibble` to convert `Grange` objecet, and then use write_csv. The basic command is like below ``` # I have to admit this examp…
Answer: Limma help (creating design matrix)
by
James W. MacDonald
55k
There's no need to do the second line in your example. The limma package is quite happy to accept an `ExpressionSet` as input, so you don't…
Answer: Rhdf5lib installation problem
by
Mike Smith
♦ 4.8k
Thanks for the details. The error occurs at the following step: ``` ../libtool: line 7486: cd: -/: invalid option ``` and I think …
Comment: Normalization for two bulk RNA datasets with different library sizes
by
Michael Love
31k
Given that tissues are nested within dataset, and you are interested in looking at time differences within tissue, I'd recommend processing…
Comment: Normalization for two bulk RNA datasets with different library sizes
by
K.
• 0
I would like to retrieve a list of target genes in all tissues after certain pathway activation to evaluate to what extent are the target g…
Votes
Answer: Limma help (creating design matrix)
Comment: Normalization for two bulk RNA datasets with different library sizes
How to better design a Volcano plot
Replace a specific nucleotide sequence, at a specific position, with another in Biostrings
Comment: How to better design a Volcano plot
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