Showing : sequencing • reset
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Job: Tenure-track Group Leader Position in Computational Biology
bioinformatics sequencing barcelona proteomics
6 days ago Robert Castelo ♦ 2.6k
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63
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Job: Post-doc position in multi-omics of Alzheimer's disease at Columbia University in New York City
JobPosting postdoc sequencing multiomics
4 weeks ago • updated 1 day ago lhd • 0
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69
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Job: Scientist/Senior Scientist, Statistical Geneticist
Sequencing Genetics GeneticsPed statistics
6 weeks ago António Miguel de Jesus Domingues • 480
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111
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Job: Postdoc: BIOINFORMATICS FOR FUNCTIONAL GENOMICS AND POPULATION GENETICS OF CANCER
GWAS lung cancer functional genomics eQTL sequencing Job
10 months ago jiyeon.choi2 • 0
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162
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Job: Post-doc fellow - Aparicio Lab
single cell bioinformatics genome sequencing Job
17 months ago jmaanaki • 0
0
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2
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272
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DESeq2 error on analyzing microbiome data
deseq2 microbiome sequencing
19 months ago zhigang.li • 0
2
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3
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292
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Boxplot function not showing all reads length on x-axis
boxplot reads fastq sequencing rsubread
21 months ago Raito92 • 40 • updated 20 months ago Wei Shi ♦ 3.3k
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1
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207
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Annotating protein sequences
Protein iranges sequencing
23 months ago ieuangw • 0
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465
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Job: Postdoc in Population Genomics - UC Davis
bioinformatics evolution sequencing genome analysis genomics Job
2.4 years ago hschmidt • 0
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356
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Job: Research Associate- Production Bioinformatics - Atlantic Cancer Research Institute - Moncton -New Brunwsiwck - Canada
cancer bioinformatics bioinformatician job sequencing Job
2.5 years ago gabriel.wajnberg • 0
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10
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674
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Ribo-seq/RNA-seq analysis -- DESeq2 multi-factor design
deseq2 sequencing ribosome profiling riboseq multiple factor design
2.6 years ago kotcha.m • 0 • updated 2.6 years ago Michael Love 31k
0
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443
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Job: Post-doc in Prostate Cancer Research (Statistics / Computational Biology) at University of St Andrews (+PhD position also available)
cancer sequencing rnaseq methylation smallrna Job
2.7 years ago Andy Lynch • 100
0
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0
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271
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Number of reads needed for Guide-Seq
sequencing
2.8 years ago Jacques-P.Tremblay • 0
0
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1
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706
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Rsamtools : separating mapped and unmapped reads from BAM or SAM files (for a newbie)
R sequencing alignment rsamtools mapping
2.8 years ago nginet • 0 • updated 2.8 years ago James W. MacDonald 56k
0
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368
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Sequence composition effect
sequencing rnaseq_analysis
3.1 years ago alemutak • 0
0
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1
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562
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write ab1 files
sangerseqr sequencing abi
3.4 years ago tmolosh • 0
2
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11
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853
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DESeq2 polysome profiling analysis with 2 interaction terms
deseq2 sequencing polysome profiling
3.7 years ago erica • 10 • updated 3.7 years ago Michael Love 31k
0
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0
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998
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Job: Postdoc / Computational Biologist for circulating tumor DNA/RNA profiling at Memorial Sloan Kettering Cancer Center MSKCC, New York
cancer sequencing genetics genomes diagnostic Job
4.5 years ago dtlabmskcc • 0
3
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8
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2.4k
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DESeq / DESeq2 for translation efficiency in polysome profiling or ribsome profiling experiments
Sequencing DESeq Sequencing DESeq
7.2 years ago Guest User ♦ 12k • updated 4.5 years ago contactbiostructure • 0
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1.1k
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Bioconductor 2.6 is released
Sequencing Microarray Visualization Infrastructure PROcess beadarray keggorthology eisa
10.8 years ago Patrick Aboyoun 1.6k • updated 4.5 years ago wangyizhusss • 0
8
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2
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1.9k
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Appropriate ways to filter counts data for voom/limma
limma edger sequencing
4.5 years ago blofeld • 10 • updated 4.5 years ago Gordon Smyth 42k
6
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4
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577
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How to normalize chemical genomics barcode sequencing data
limma normalization sequencing edger
4.7 years ago Yury Bukhman • 20 • updated 4.7 years ago Aaron Lun ♦ 26k
0
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4
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1.4k
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DNAString: Standard checksum function?
Biostrings FASTA sequencing
5.0 years ago Henrik Bengtsson ♦ 2.4k
2
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4
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787
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Complex ANOVA analysis in EdgeR
edger anova sequencing
5.0 years ago kmyers2 • 0 • updated 5.0 years ago Aaron Lun ♦ 26k
0
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5
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992
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getting sample size for RNAseq experiment
rnaseqpower sspa sample size sequencing complex-design
5.0 years ago roser.navarro • 0 • updated 5.0 years ago m.van_iterson • 20
0
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4
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905
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IONiseR readFast5Summary Error
R sequencing preprocessing bioconductor
5.3 years ago mariandhore • 0 • updated 5.2 years ago Mike Smith ♦ 4.8k
1
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1.1k
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Job: Post-doc Position in Epigenetic Bioinformatics
cancer sequencing epigenetics computational biology bioinformatics Job
5.3 years ago Yassen Assenov • 10
1
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1
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1.5k
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Trim DNAStringSets using ShortRead while keeping the primer sequences?
sequencing biostrings shortread
5.3 years ago steven.everman • 10 • updated 5.3 years ago Martin Morgan 25k
1
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2
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1.1k
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DNAcopy: Using log-ratios and B-allele frequencies
sequencing snp
5.4 years ago markus.riester • 0 • updated 5.4 years ago Jan Oosting • 20
1
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2
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670
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Can I use rtracklayer to get the sequence surrounding a set of variants?
rtracklayer sequencing reference genome
5.5 years ago Stephanie M. Gogarten • 800
1
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1
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1.6k
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Perplexing results with Limma with RNA-seq data
sequencing microarray
5.5 years ago chris86 • 390 • updated 5.5 years ago Steve Lianoglou 13k
3
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975
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News: BioCAsia, 8 Sept 2015, Tokyo
sequencing transcription epigenomics visualization infrastructure News
5.7 years ago • updated 5.6 years ago Matthew Ritchie • 970
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2
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982
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preparing sequencing data for use with anota
Sequencing Normalization PROcess anota Sequencing Normalization PROcess anota
6.9 years ago Guest User ♦ 12k • updated 5.6 years ago kesarwani.anil • 0
3
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1
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1.4k
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Adjusting for gender using limma
limma microarray sequencing
5.6 years ago chris86 • 390 • updated 5.6 years ago James W. MacDonald 56k
0
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1
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821
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Getting data on the out-of-frame transcripts
annotate sequencing genomicfeatures
5.6 years ago janson.white • 0 • updated 5.6 years ago Hervé Pagès 14k
3
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4
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2.0k
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Variance filtering prior to RNA-seq differential expression
sequencing deseq limma
5.6 years ago chris86 • 390 • updated 5.6 years ago Gordon Smyth 42k
0
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2
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2.3k
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Bioconductor 2.12 is released
BiocViews aCGH SNP Transcription Sequencing Microarray Coverage Alignment Annotation GO
7.9 years ago Dan Tenenbaum ♦ 8.2k • updated 5.6 years ago marksteve952 • 0
4
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2
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1.4k
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Detect global differences in miRNA expression between tumor and normal using spike-ins
edger limma mirna sequencing
5.6 years ago R • 40 • updated 5.6 years ago Aaron Lun ♦ 26k
2
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3
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949
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SVA batch effects for different technologies
normalization deseq2 sequencing sva
5.7 years ago marcin.bazyliszek • 0
4
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904
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News: Hands-on Bioconductor course, 7 Sept 2015, Tokyo
sequencing transcription variantfiltering annotation News
5.7 years ago Matthew Ritchie • 970
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4
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4.5k
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DESeq2 Error in estimateSizeFactorsForMatrix
Sequencing Alignment DESeq DESeq2 Sequencing Alignment DESeq DESeq2
6.7 years ago Guest User ♦ 12k • updated 5.7 years ago gaelgarcia • 0
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1.1k
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Job: Bioinformatics Scientist, Astex Pharmaceuticals
bioinformatician job oncology sequencing drug development Job
5.7 years ago Harpreet Saini • 30
1
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0
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763
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Genome editing analysis with Illumina sequencing
indel sequencing alignment
5.8 years ago Merienne Nicolas • 120
0
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0
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515
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Invitation Research Collaborations
cancer microarray mirna sequencing
5.9 years ago alexandru.floares • 0
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0
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1.1k
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Job: Research Associate, Cambridge, UK - Oesophageal Cancer ICGC project
job sequencing methylation expression Job
6.0 years ago Andy Lynch • 100
3
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3
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1.4k
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Clarrification of ReadDNAStringSet
sequencing
6.1 years ago khouloud.madbouh • 0
6
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1
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2.2k
Views
[ReportingTools] HTMLReport of DESeq2 results using Ensembl Gene Ids
Sequencing Annotation convert biomaRt ReportingTools DESeq2 Sequencing Annotation convert
7.2 years ago Jason Hackney • 160 • updated 6.1 years ago andrew.j.skelton73 • 340
0
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878
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Job: Computational Biologist Research Associate Position at the University of Cambridge
cancer sequencing prostate Job
6.3 years ago Andy Lynch • 100
0
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3
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606
Views
How does shearwater determine the reference sequence?
sequencing
6.4 years ago Asma rabe • 290
0
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1
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4.7k
Views
Missing SAM header?
sequencing
6.4 years ago Chris Fenton • 80 • updated 6.4 years ago James W. MacDonald 56k
300 results • Page 1 of 6
Recent ...
Replies
Comment: How to launch the RnBeads Data Juggler? by Federica • 0
It worked! Thank u so much for your help!
Answer: makeTxDbFromUCSC("mm10", "refGene") gives "not supported" error by James W. MacDonald 56k
As you have noted, this was fixed last November: ``` > makeTxDbFromUCSC("mm10","refGene") Download the refGene table ... OK Download …
Comment: goseq package loading issues by James W. MacDonald 56k
Usually if there is a 00LOCK dir, it tells you that. What you are seeing may instead be due to more than one R session running concurrently…
Comment: How to launch the RnBeads Data Juggler? by James W. MacDonald 56k
You need to [install Rtools][1] to be able to compile source packages. After which it works fine: ``` > install("pillar") Bioconductor ve…
Comment: goseq package loading issues by avinashi • 0
Hi, I tried doing this. When using valid (), I saw that there were packages that needed updating so I ran: ```r BiocManager::install(c( …
Votes
Comment: How to launch the RnBeads Data Juggler?
Comment: Dealing with my.contrasts with replicates containing nested samples
Answer: How to launch the RnBeads Data Juggler?
Answer: How to find the source code of the package STRINGdb ?
Comment: DESeq2 extracting relevant contrasts with interactions
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