Showing : tilingarray • reset
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Mapping Affymetrix Arabidopsis Tiling Array 1.0R in Integrated Genome Browser
bioconductor affy tilingarray
4.1 years ago jmtepp • 0
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Ringo Plots Only Partially Made
Ringo affy tilingarray plot starr
5.5 years ago bruce.moran • 30
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undocumented behavior in tilingArray::costMatrix [Scanned]
tilingArray tilingArray
8.5 years ago Du, Yang • 10
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tilingArray getting started questions
GO Yeast tilingArray Starr GO Yeast tilingArray Starr
10.4 years ago Noah Dowell • 410
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Help with Oligo Package: Extracting and Graphing
Transcription Normalization Yeast probe affy graph tilingArray oligo pdInfoBuilder Starr
11.2 years ago Noah Dowell • 410 • updated 11.2 years ago Tobias Straub • 420
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tilingArray: error message in function segment()
tilingArray tilingArray
11.8 years ago Hui Tang • 20
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tilingArray problems
Normalization GO tilingArray Normalization GO tilingArray
12.2 years ago Wolfgang Huber 13k
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TilingArray Normalization
Transcription Normalization probe tilingArray Transcription Normalization probe tilingArray
12.2 years ago Anjan Purkayastha • 90 • updated 12.2 years ago Wolfgang Huber 13k
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tilingArray problems
tilingArray tilingArray
12.2 years ago Anjan Purkayastha • 90
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applicability of tilingArray package
Normalization Yeast affy tilingArray Normalization Yeast affy tilingArray
12.2 years ago Michael Palumbo • 50 • updated 12.2 years ago Wolfgang Huber 13k
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tilingArray- normalizeByReference
probe tilingArray probe tilingArray
12.2 years ago Anjan Purkayastha • 90
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combining data from two R arrays
GO Survival annotate genefilter vsn tilingArray GO Survival annotate genefilter vsn
13.3 years ago Richard Harrison • 70
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running time of snapCGH processCGH and runDNAcopy
aCGH Survival CGH annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH aCGH
13.3 years ago caiwei@mdanderson.org • 110 • updated 13.3 years ago jhs1jjm@leeds.ac.uk • 230
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Chromosome 23 and 24 dropped after run snapCGH processCGH
aCGH Survival Cancer annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH
13.3 years ago caiwei@mdanderson.org • 110 • updated 13.3 years ago J-C. Marioni • 40
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Stuck with Yeast Tiling Array
tilingArray tilingArray
13.4 years ago Richard Harrison • 70 • updated 13.4 years ago Joern Toedling • 720
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Normalization in davidTiling demo
Normalization GO Survival Biobase genefilter geneplotter affy vsn PROcess tilingArray GO
13.9 years ago Julian Gehring ♦ 1.3k • updated 13.9 years ago Wolfgang Huber 13k
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Normalization in davidTiling demo
Normalization GO Survival genefilter geneplotter affy vsn tilingArray affyio GO Survival
13.9 years ago Julian Gehring ♦ 1.3k • updated 13.9 years ago Wolfgang Huber 13k
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Scripts to handle array CGH data files from NimbleGen
CGH tilingArray CGH tilingArray
14.4 years ago Todd Richmond • 140 • updated 14.4 years ago ma3mls@bath.ac.uk • 40
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FW: Cannot restore saved data in .Rdata after loading tilingArray - object 'breakpoints' not found
Cancer Breast PROcess tilingArray snapCGH Cancer Breast PROcess tilingArray snapCGH
14.4 years ago Steven McKinney • 310 • updated 14.4 years ago Wolfgang Huber 13k
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tiling/SNP microarrays
SNP Coverage tilingArray SNP Coverage tilingArray
14.5 years ago Jeffrey Blanchard • 10 • updated 14.5 years ago Sean Davis 21k
20 results • Page 1 of 1
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Comment: How to get both hgnc_symbol and all cdna_coding_start values associated? by bastien_chassagnol • 0
Thanks for your suggest, hoping one day that both nomenclature (HGNC and Ensembl) collaborate more, such that you can get at once all relev…
Comment: DESeq2 and shrinkage of log2 fold changes by Michael Love 31k
What do you mean that the set with FDR bound increases? Shrinkage methods in current versions of DESeq2 do not change the FDR (`padj` colum…
Answer: The compare result is different in score and Conc in DiffBind by shangguandong1996 • 20
I know in newer DiffBind version, the default of `score` argument is different, So I post a newer DiffBind version result. ``` library(…
Answer: Conc_1 in differnet dba.report result is slightly different by shangguandong1996 • 20
For a newer DiffBind version ``` library(DiffBind) library(BiocParallel) library(dplyr) tamoxifen <- dba(sampleSheet="tamoxifen.csv") ta…
Comment: Conc_1 in differnet dba.report result is slightly different by shangguandong1996 • 20
Hi, Dr Stark I just find you fixed the link, and I want to use the test data to reproduce my issue ``` library(DiffBind) library(BiocPara…
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Answer: How to get both hgnc_symbol and all cdna_coding_start values associated?
A: Performing differential gene analysis on RT PCR experimental data
A: Performing differential gene analysis on RT PCR experimental data
Comment: DESeq2: Significant padj and LFC in a 0 vs. 20 counts comparison?
A: Using the plotting functions of clusterProfiler / enrichplot with enrichment res
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