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topaseq

• updated 2.6 years ago Gordon Smyth 41k

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366

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ToPASeq SPIA pathway analysis R

2.8 years ago fawazfebin • 30

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370

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topaseq

• updated 3.3 years ago Martin Morgan 25k

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installation package installation topaseq igraph LD_LIBRARY_PATH

4.0 years ago jan.soderman • 0

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433

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ToPASeq

• updated 4.0 years ago theobroma22 • 10

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rnaseq Topaseq

4.7 years ago saamar.rajput • 0

6 results • Page 1 of 1

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Answer: The compare result is different in score and Conc in DiffBind by shangguandong1996 • 20

I know in newer DiffBind version, the default of `score` argument is different, So I post a newer DiffBind version result. ``` library(…

Answer: Conc_1 in differnet dba.report result is slightly different by shangguandong1996 • 20

For a newer DiffBind version ``` library(DiffBind) library(BiocParallel) library(dplyr) tamoxifen <- dba(sampleSheet="tamoxifen.csv") ta…

Comment: Conc_1 in differnet dba.report result is slightly different by shangguandong1996 • 20

Hi, Dr Stark I just find you fixed the link, and I want to use the test data to reproduce my issue ``` library(DiffBind) library(BiocPara…

Comment: DESeq2 and shrinkage of log2 fold changes by Asier • 0

One question related to this. In the case of using the schrinkage (in my dataset of miRNA-seq) the number of SDE miRNAs (FDR) increases wit…

Comment: [Limma] Correcting Dye swap effect by MatthewP • 0

Hello, Can you explain "M vs M plot" with more details? I have include dye-effect in limma design model, and got very few probes differenti…

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A: Performing differential gene analysis on RT PCR experimental data

Comment: DESeq2: Significant padj and LFC in a 0 vs. 20 counts comparison?

A: Using the plotting functions of clusterProfiler / enrichplot with enrichment res

Comment: DESeq2: Significant padj and LFC in a 0 vs. 20 counts comparison?

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